Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
SMARCA1P28370 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 RNU6-462P-201ENST00000362659 105 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 MIR649-201ENST00000384843 97 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SMARCA1P28370 RPL21P108-201ENST00000413857 481 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.94□□□□□ -1.62
SMARCA1P28370 OR5BE1P-201ENST00000425977 939 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AC008065.1-201ENST00000428525 348 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AL512649.1-201ENST00000428997 581 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.94□□□□□ -1.62
SMARCA1P28370 BTF3P10-201ENST00000433415 495 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.94□□□□□ -1.62
SMARCA1P28370 MTND4P6-201ENST00000438297 472 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 BMI1P1-201ENST00000445879 941 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AC005008.1-201ENST00000456151 612 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AC010618.1-201ENST00000469924 477 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AC109327.1-201ENST00000471666 403 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 PRELID3BP7-201ENST00000503606 469 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.94□□□□□ -1.62
SMARCA1P28370 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.94□□□□□ -1.62
SMARCA1P28370 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 OR4A12P-201ENST00000530847 918 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.94□□□□□ -1.62
SMARCA1P28370 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.94□□□□□ -1.62
SMARCA1P28370 ABBA01006766.1-201ENST00000584728 294 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC4.94□□□□□ -1.62
SMARCA1P28370 AC068276.1-201ENST00000605793 379 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 AC092354.2-201ENST00000607786 514 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 OR6R2P-201ENST00000609216 300 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 AC100793.4-201ENST00000613683 429 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 AC099842.1-201ENST00000619919 596 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 FAM157B-203ENST00000639350 358 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 OR5BE1P-202ENST00000641168 1176 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 OR4G11P-202ENST00000642116 1414 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 AL031985.3-201ENST00000565390 2449 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.94□□□□□ -1.62
SMARCA1P28370 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.94□□□□□ -1.62
SMARCA1P28370 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
SMARCA1P28370 RNU1-15P-201ENST00000353977 144 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 RNU6-501P-201ENST00000364072 100 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 SNORA70.2-201ENST00000364506 135 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 RNY3P10-201ENST00000384764 102 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 VN1R8P-201ENST00000407739 893 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 CDK8P2-201ENST00000415020 547 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 PDSS1P1-201ENST00000422953 1114 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 MTCO3P2-201ENST00000457365 171 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 RNA5SP246-201ENST00000458909 119 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 AC105137.1-201ENST00000484355 562 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.93□□□□□ -1.62
SMARCA1P28370 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.93□□□□□ -1.62
SMARCA1P28370 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.93□□□□□ -1.62
SMARCA1P28370 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 AC021146.3-201ENST00000511911 260 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 AC026412.2-201ENST00000512270 1075 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 RNU6-150P-201ENST00000516237 95 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.93□□□□□ -1.62
SMARCA1P28370 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.93□□□□□ -1.62
SMARCA1P28370 AGGF1P8-201ENST00000562979 1000 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 PCMTD1P2-201ENST00000565017 355 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 LARP7P2-201ENST00000575306 125 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 MIR4504-201ENST00000577413 92 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 AP001004.1-201ENST00000582468 324 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 AC012065.4-201ENST00000602445 679 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.93□□□□□ -1.62
SMARCA1P28370 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 MIR8059-201ENST00000620427 81 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 MIR6830-201ENST00000636015 70 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.93□□□□□ -1.62
SMARCA1P28370 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 AC092435.4-201ENST00000623012 4159 ntBASIC4.93□□□□□ -1.62
SMARCA1P28370 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SMARCA1P28370 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SMARCA1P28370 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SMARCA1P28370 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SMARCA1P28370 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.92□□□□□ -1.62
SMARCA1P28370 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
SMARCA1P28370 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.92□□□□□ -1.62
SMARCA1P28370 LINC00561-201ENST00000565815 2738 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
SMARCA1P28370 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SMARCA1P28370 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms