Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL691449.1-201ENST00000426570 421 ntBASIC4.3□□□□□ -1.72
BDNFP23560 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.3□□□□□ -1.72
BDNFP23560 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.3□□□□□ -1.72
BDNFP23560 RPL17P49-201ENST00000443728 411 ntBASIC4.3□□□□□ -1.72
BDNFP23560 RPL12P26-201ENST00000452430 487 ntBASIC4.3□□□□□ -1.72
BDNFP23560 RAD23BP3-201ENST00000454157 1152 ntBASIC4.3□□□□□ -1.72
BDNFP23560 BTF3P5-201ENST00000457252 467 ntBASIC4.3□□□□□ -1.72
BDNFP23560 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.3□□□□□ -1.72
BDNFP23560 AC092754.2-201ENST00000463506 460 ntBASIC4.3□□□□□ -1.72
BDNFP23560 RPS4XP10-201ENST00000465034 731 ntBASIC4.3□□□□□ -1.72
BDNFP23560 RPS26P28-201ENST00000470806 348 ntBASIC4.3□□□□□ -1.72
BDNFP23560 NAA50-206ENST00000493454 964 ntTSL 2 BASIC4.3□□□□□ -1.72
BDNFP23560 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.3□□□□□ -1.72
BDNFP23560 AC104986.1-201ENST00000517978 436 ntBASIC4.3□□□□□ -1.72
BDNFP23560 AC022861.1-201ENST00000522981 663 ntBASIC4.3□□□□□ -1.72
BDNFP23560 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 AC092851.1-201ENST00000535964 478 ntBASIC4.3□□□□□ -1.72
BDNFP23560 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.3□□□□□ -1.72
BDNFP23560 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.3□□□□□ -1.72
BDNFP23560 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.3□□□□□ -1.72
BDNFP23560 AC106785.1-201ENST00000565935 262 ntBASIC4.3□□□□□ -1.72
BDNFP23560 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
BDNFP23560 AC012417.1-201ENST00000582307 1039 ntBASIC4.3□□□□□ -1.72
BDNFP23560 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.3□□□□□ -1.72
BDNFP23560 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 AC244505.7-201ENST00000599675 272 ntBASIC4.3□□□□□ -1.72
BDNFP23560 AL109653.1-201ENST00000603091 248 ntBASIC4.3□□□□□ -1.72
BDNFP23560 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.3□□□□□ -1.72
BDNFP23560 BNIP3P11-201ENST00000603878 563 ntBASIC4.3□□□□□ -1.72
BDNFP23560 AL158050.2-201ENST00000605336 568 ntBASIC4.3□□□□□ -1.72
BDNFP23560 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.3□□□□□ -1.72
BDNFP23560 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC4.3□□□□□ -1.72
BDNFP23560 TUG1_1.1-201ENST00000610654 145 ntBASIC4.3□□□□□ -1.72
BDNFP23560 MIR6868-201ENST00000611215 58 ntBASIC4.3□□□□□ -1.72
BDNFP23560 AL138478.1-201ENST00000612252 832 ntBASIC4.3□□□□□ -1.72
BDNFP23560 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 AC105074.1-201ENST00000623380 3095 ntBASIC4.3□□□□□ -1.72
BDNFP23560 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.3□□□□□ -1.72
BDNFP23560 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 AL645937.1-201ENST00000641739 1652 ntBASIC4.29□□□□□ -1.72
BDNFP23560 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
BDNFP23560 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.29□□□□□ -1.72
BDNFP23560 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
BDNFP23560 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 RNA5SP52-201ENST00000362448 134 ntBASIC4.29□□□□□ -1.72
BDNFP23560 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.29□□□□□ -1.72
BDNFP23560 SNORA40.2-201ENST00000390847 128 ntBASIC4.29□□□□□ -1.72
BDNFP23560 ZNF602P-201ENST00000405929 924 ntBASIC4.29□□□□□ -1.72
BDNFP23560 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.29□□□□□ -1.72
BDNFP23560 PGBD4P8-201ENST00000412993 562 ntBASIC4.29□□□□□ -1.72
BDNFP23560 RPS15AP38-201ENST00000413110 372 ntBASIC4.29□□□□□ -1.72
BDNFP23560 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.29□□□□□ -1.72
BDNFP23560 AL161449.1-201ENST00000414531 1199 ntBASIC4.29□□□□□ -1.72
BDNFP23560 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.29□□□□□ -1.72
BDNFP23560 OR8F1P-201ENST00000425243 930 ntBASIC4.29□□□□□ -1.72
BDNFP23560 MTCO1P39-201ENST00000426148 480 ntBASIC4.29□□□□□ -1.72
BDNFP23560 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.29□□□□□ -1.72
BDNFP23560 TBCAP1-201ENST00000436520 327 ntBASIC4.29□□□□□ -1.72
BDNFP23560 MTCYBP31-201ENST00000438855 1122 ntBASIC4.29□□□□□ -1.72
BDNFP23560 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC4.29□□□□□ -1.72
BDNFP23560 NIPA2P2-201ENST00000496376 1083 ntBASIC4.29□□□□□ -1.72
BDNFP23560 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.29□□□□□ -1.72
BDNFP23560 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.29□□□□□ -1.72
BDNFP23560 PPBPP1-201ENST00000510807 373 ntBASIC4.29□□□□□ -1.72
BDNFP23560 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.29□□□□□ -1.72
BDNFP23560 AC091163.3-201ENST00000518269 1144 ntBASIC4.29□□□□□ -1.72
BDNFP23560 RPL12P22-201ENST00000519073 490 ntBASIC4.29□□□□□ -1.72
BDNFP23560 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 ERHP1-201ENST00000523006 310 ntBASIC4.29□□□□□ -1.72
BDNFP23560 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.29□□□□□ -1.72
BDNFP23560 AC005832.3-201ENST00000537929 631 ntBASIC4.29□□□□□ -1.72
BDNFP23560 AC024224.1-201ENST00000538284 609 ntBASIC4.29□□□□□ -1.72
BDNFP23560 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.29□□□□□ -1.72
BDNFP23560 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.29□□□□□ -1.72
BDNFP23560 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.29□□□□□ -1.72
BDNFP23560 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.29□□□□□ -1.72
BDNFP23560 MIR4286-201ENST00000580651 93 ntBASIC4.29□□□□□ -1.72
BDNFP23560 VN1R83P-201ENST00000595685 445 ntBASIC4.29□□□□□ -1.72
BDNFP23560 AC069304.2-201ENST00000605154 435 ntBASIC4.29□□□□□ -1.72
BDNFP23560 AC002076.2-201ENST00000617362 122 ntBASIC4.29□□□□□ -1.72
BDNFP23560 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.29□□□□□ -1.72
BDNFP23560 AL109620.1-201ENST00000618738 1197 ntBASIC4.29□□□□□ -1.72
BDNFP23560 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC4.29□□□□□ -1.72
BDNFP23560 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
BDNFP23560 AP005264.7-201ENST00000625003 745 ntBASIC4.29□□□□□ -1.72
BDNFP23560 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.29□□□□□ -1.72
BDNFP23560 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.29□□□□□ -1.72
BDNFP23560 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 AC005183.1-201ENST00000603687 1979 ntBASIC4.29□□□□□ -1.72
BDNFP23560 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BDNFP23560 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
BDNFP23560 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
BDNFP23560 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms