Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RN7SKP44-201ENST00000363602 316 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
COL5A1P20908 RPS6P14-201ENST00000425165 719 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC2.74□□□□□ -1.97
COL5A1P20908 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC2.74□□□□□ -1.97
COL5A1P20908 AL513343.1-201ENST00000451818 792 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 OR52A4P-202ENST00000481634 799 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 TXNP6-201ENST00000510190 310 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 RN7SKP244-201ENST00000516513 307 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.74□□□□□ -1.97
COL5A1P20908 AP000873.5-201ENST00000533906 236 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
COL5A1P20908 AC027176.1-201ENST00000560204 514 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC2.74□□□□□ -1.97
COL5A1P20908 AC007423.1-201ENST00000605009 627 ntBASIC2.74□□□□□ -1.97
COL5A1P20908 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC2.74□□□□□ -1.97
COL5A1P20908 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL5A1P20908 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC2.73□□□□□ -1.97
COL5A1P20908 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.73□□□□□ -1.97
COL5A1P20908 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
COL5A1P20908 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL5A1P20908 MIR365B-201ENST00000362317 111 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 U8.2-201ENST00000363156 134 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 MRPL50P2-201ENST00000416821 482 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AL356806.1-201ENST00000422524 916 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 ISCA1P6-201ENST00000427740 390 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC2.73□□□□□ -1.97
COL5A1P20908 AP000936.2-201ENST00000447151 681 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 RN7SL75P-201ENST00000461926 281 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 RPL23AP14-201ENST00000468281 468 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 RPL31P13-201ENST00000484151 370 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AC118282.1-201ENST00000506408 765 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.73□□□□□ -1.97
COL5A1P20908 AC119751.1-201ENST00000513357 765 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 RN7SKP31-201ENST00000516354 278 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 RNU6-467P-201ENST00000517027 110 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AC092451.2-201ENST00000538746 658 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AC122134.1-201ENST00000565664 1104 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC2.73□□□□□ -1.97
COL5A1P20908 RPL21P136-201ENST00000605378 396 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AC092953.2-201ENST00000608000 699 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC2.73□□□□□ -1.97
COL5A1P20908 AP002371.2-201ENST00000624450 503 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
COL5A1P20908 ZNF658B-202ENST00000615961 3375 ntBASIC2.73□□□□□ -1.97
COL5A1P20908 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
COL5A1P20908 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL5A1P20908 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC2.72□□□□□ -1.97
COL5A1P20908 RAD1P1-201ENST00000231383 813 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
COL5A1P20908 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A1P20908 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.72□□□□□ -1.97
COL5A1P20908 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.72□□□□□ -1.97
COL5A1P20908 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AL159169.1-201ENST00000421119 127 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 MTCO1P51-201ENST00000427672 1060 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC2.72□□□□□ -1.97
COL5A1P20908 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.72□□□□□ -1.97
COL5A1P20908 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL5A1P20908 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.72□□□□□ -1.97
COL5A1P20908 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC2.72□□□□□ -1.97
COL5A1P20908 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.72□□□□□ -1.97
COL5A1P20908 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC2.72□□□□□ -1.97
COL5A1P20908 OR6R2P-201ENST00000609216 300 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AP004607.9-201ENST00000618202 316 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC2.72□□□□□ -1.97
COL5A1P20908 AL450326.2-201ENST00000421913 1962 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AC107081.3-201ENST00000612715 2034 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.72□□□□□ -1.97
COL5A1P20908 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.72□□□□□ -1.97
COL5A1P20908 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A1P20908 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC2.72□□□□□ -1.97
COL5A1P20908 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A1P20908 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A1P20908 Y_RNA.62-201ENST00000362840 99 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 Y_RNA.238-201ENST00000364441 102 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 MIR196B-201ENST00000384852 84 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 BX276092.3-201ENST00000424182 230 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AC106901.1-201ENST00000425086 698 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 MTCO1P57-201ENST00000432182 261 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.72□□□□□ -1.97
COL5A1P20908 RPL7P12-201ENST00000446719 750 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC2.72□□□□□ -1.97
COL5A1P20908 AL500527.1-201ENST00000448532 255 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 RPL29P29-201ENST00000448725 423 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC2.72□□□□□ -1.97
COL5A1P20908 RNU7-170P-201ENST00000459303 61 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC2.72□□□□□ -1.97
COL5A1P20908 RNU4-18P-201ENST00000516751 149 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AC025423.2-201ENST00000537570 439 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A1P20908 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC2.72□□□□□ -1.97
COL5A1P20908 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.72□□□□□ -1.97
COL5A1P20908 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC2.72□□□□□ -1.97
COL5A1P20908 AC009977.1-201ENST00000586015 570 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 DNAJC19P3-201ENST00000594491 331 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AC117490.2-201ENST00000610042 594 ntBASIC2.72□□□□□ -1.97
COL5A1P20908 AL133445.2-201ENST00000611191 527 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms