Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RPL21P12-201ENST00000559810 515 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 RN7SL708P-201ENST00000580952 299 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.37□□□□□ -1.71
HOXA3O43365 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA3O43365 AC113194.1-201ENST00000606037 500 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 AC103710.2-201ENST00000609912 942 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 AL590099.1-201ENST00000615276 138 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC109583.2-201ENST00000617367 129 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 CYP4F35P-202ENST00000636121 390 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 AL138713.1-201ENST00000624026 2130 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HOXA3O43365 DHX40P1-201ENST00000588725 1412 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXA3O43365 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.36□□□□□ -1.71
HOXA3O43365 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA3O43365 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA3O43365 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA3O43365 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
HOXA3O43365 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA3O43365 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXA3O43365 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA3O43365 THAP12P4-201ENST00000528321 2266 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA3O43365 AL121886.1-201ENST00000358609 435 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 Y_RNA.58-201ENST00000362807 102 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 Y_RNA.154-201ENST00000363624 102 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 SNORA51.2-201ENST00000364595 132 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 RNY3P1-201ENST00000365085 102 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 RNY3-201ENST00000365484 102 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 SNORA32.2-201ENST00000384049 122 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 Y_RNA.490-201ENST00000384413 102 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 RNU6-278P-201ENST00000390945 109 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 RNU6-510P-201ENST00000391239 108 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AL645733.1-201ENST00000402250 217 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 RN7SKP125-201ENST00000410481 302 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 OR4K11P-201ENST00000431829 904 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 RPL12P17-201ENST00000432393 498 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA3O43365 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA3O43365 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA3O43365 RPL21P89-201ENST00000444021 467 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA3O43365 MRPL50P4-201ENST00000446432 475 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 AC108059.3-201ENST00000456388 214 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 GMFBP1-201ENST00000467831 427 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AL139099.1-201ENST00000497398 403 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA3O43365 AC117522.3-201ENST00000507974 584 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 FTH1P21-201ENST00000512179 511 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC112206.3-201ENST00000514578 389 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC107953.1-201ENST00000522216 297 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC011979.2-201ENST00000527568 352 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA3O43365 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA3O43365 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 AL442663.2-201ENST00000554385 511 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC068831.4-201ENST00000556118 109 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA3O43365 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.36□□□□□ -1.71
HOXA3O43365 RPL10P14-201ENST00000565265 298 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
HOXA3O43365 MIR4700-201ENST00000578311 74 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 OR4K8P-201ENST00000578842 1048 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA3O43365 COX6CP3-201ENST00000580869 223 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC011477.5-201ENST00000586571 259 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AP001029.3-201ENST00000588063 596 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC069307.1-201ENST00000602820 447 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA3O43365 AC079684.1-201ENST00000621405 437 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC099494.2-201ENST00000623371 978 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC090617.10-201ENST00000624308 134 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 AC008758.3-201ENST00000507003 1829 ntBASIC4.36□□□□□ -1.71
HOXA3O43365 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
HOXA3O43365 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA3O43365 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA3O43365 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA3O43365 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.36□□□□□ -1.71
HOXA3O43365 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
HOXA3O43365 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms