Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC110792.1-201ENST00000491826 472 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC116353.3-201ENST00000511215 249 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC010625.1-201ENST00000511296 403 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC108064.1-201ENST00000513791 460 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 RNU7-143P-201ENST00000516781 65 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 OR4P1P-201ENST00000530808 1136 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC007687.1-201ENST00000602704 304 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 MRPS35P3-201ENST00000603189 709 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC114878.2-201ENST00000604863 1251 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC080013.4-201ENST00000607624 649 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC013470.4-201ENST00000619978 986 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC023510.2-201ENST00000622162 746 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC244517.1-201ENST00000606030 2086 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC095050.2-201ENST00000510748 1458 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AP001350.1-201ENST00000601906 1524 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS28Q9UK41 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.15□□□□□ -1.74
VPS28Q9UK41 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS28Q9UK41 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.15□□□□□ -1.74
VPS28Q9UK41 RNU6-621P-201ENST00000364752 109 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 Y_RNA.311-201ENST00000365068 96 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 MIR3074-201ENST00000384885 81 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 SNORA3C-201ENST00000408792 125 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 RAC1P3-201ENST00000416129 580 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 ELOCP9-201ENST00000418624 239 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS28Q9UK41 AL358472.1-201ENST00000431295 329 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 RPL21P89-201ENST00000444021 467 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 RPL12P26-201ENST00000452430 487 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 AL445669.2-201ENST00000454425 421 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 FTH1P2-201ENST00000466086 412 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC020898.1-201ENST00000474167 787 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 RPL7P38-201ENST00000488396 739 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS28Q9UK41 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS28Q9UK41 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 MAGOH2P-202ENST00000584384 429 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC131235.4-201ENST00000609288 620 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 MIR6868-201ENST00000611215 58 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC018755.4-201ENST00000619715 454 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 AC006963.1-201ENST00000624003 1052 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 AL390862.1-201ENST00000635467 1469 ntBASIC4.15□□□□□ -1.75
VPS28Q9UK41 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS28Q9UK41 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS28Q9UK41 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS28Q9UK41 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AL365440.1-201ENST00000436135 2167 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AP002907.1-201ENST00000606361 1430 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 ZNF962P-201ENST00000443465 3140 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 RPS7P15-201ENST00000415804 584 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 RAD23BP2-201ENST00000416003 1207 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 MTCO3P12-201ENST00000416718 547 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 RPL17P36-201ENST00000420302 549 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC011742.1-201ENST00000431448 434 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC092451.1-201ENST00000480211 153 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 MTCYBP17-201ENST00000503579 789 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 HMGB1P22-201ENST00000505315 124 ntBASIC4.14□□□□□ -1.75
VPS28Q9UK41 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS28Q9UK41 FTH1P21-201ENST00000512179 511 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms