Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 HMGB3P23-201ENST00000414981 585 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 RPL17P49-201ENST00000443728 411 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 MIR5187-201ENST00000583479 76 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC067959.1-201ENST00000604334 379 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 AL451086.1-201ENST00000605596 223 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 RNU1-30P-201ENST00000606575 163 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 AL110115.1-201ENST00000614396 364 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AL590396.4-201ENST00000636779 956 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC007656.2-201ENST00000624902 4547 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AL136520.1-201ENST00000600311 1322 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS39Q96JC1 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS39Q96JC1 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS39Q96JC1 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS39Q96JC1 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 TMSB4XP8-201ENST00000402089 135 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AL136116.1-201ENST00000403591 381 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 TMSB4XP6-201ENST00000415187 135 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 TMSB4XP1-201ENST00000424567 135 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC127537.2-201ENST00000439258 465 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 PTGES3P5-201ENST00000455109 434 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC017015.1-201ENST00000477387 286 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC104629.1-201ENST00000494226 508 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC026784.1-201ENST00000507986 352 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC105914.1-201ENST00000511798 226 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 RNU2-27P-201ENST00000516185 142 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 RNU6-1231P-201ENST00000517185 103 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AP003355.1-201ENST00000518956 587 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 SNORD39.3-201ENST00000584451 71 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC009948.4-201ENST00000604692 675 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC090912.3-201ENST00000609775 533 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC006329.2-201ENST00000611491 394 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 MIR6798-201ENST00000612887 67 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC068831.8-201ENST00000620171 435 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS39Q96JC1 ZNF849P-201ENST00000594711 1566 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS39Q96JC1 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.62□□□□□ -1.83
VPS39Q96JC1 AC118273.1-201ENST00000525324 3006 ntBASIC3.62□□□□□ -1.83
VPS39Q96JC1 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS39Q96JC1 RPL7P60-201ENST00000397636 735 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC069282.1-201ENST00000411911 526 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC127526.1-201ENST00000417526 366 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 YPEL5P1-201ENST00000419731 367 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS39Q96JC1 DEFB130D-201ENST00000426866 237 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 KCTD10P1-201ENST00000434203 625 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 RABEPKP1-201ENST00000440529 1026 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC008379.1-201ENST00000463655 464 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC084357.1-201ENST00000473404 255 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC091959.2-201ENST00000477363 321 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 VPS26AP1-201ENST00000483197 979 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms