Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC104090.1-201ENST00000506341 1171 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AP000926.4-201ENST00000527351 454 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AP000790.1-201ENST00000528891 737 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AL161713.1-201ENST00000555538 145 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 MTCYBP28-201ENST00000566728 1132 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC020914.4-201ENST00000597690 277 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC113194.1-201ENST00000606037 500 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC012603.1-201ENST00000606424 528 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC131159.1-201ENST00000621854 213 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 CDR1-202ENST00000625883 1485 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP41Q3LFD5 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
USP41Q3LFD5 AC106871.1-201ENST00000568324 3102 ntBASIC4.21□□□□□ -1.73
USP41Q3LFD5 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
USP41Q3LFD5 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 SNORA71.3-201ENST00000362582 128 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 Y_RNA.311-201ENST00000365068 96 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 RNU6-657P-201ENST00000383904 107 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AL603766.1-201ENST00000407763 664 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 MIR1251-201ENST00000408552 70 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 RNU2-21P-201ENST00000410368 188 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 RNU2-28P-201ENST00000410457 189 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC004987.3-201ENST00000413879 771 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 RPS15AP40-201ENST00000419621 391 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC006946.1-201ENST00000429106 328 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 RPL7P28-201ENST00000437739 740 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 ATG12P2-201ENST00000456830 416 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 RPL21P11-201ENST00000461458 483 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC010301.1-201ENST00000473936 355 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 ACTG1P13-201ENST00000486987 1043 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 SNX5P1-201ENST00000505757 1041 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC093853.1-201ENST00000515689 483 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 MTND2P26-201ENST00000528255 1029 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC090502.2-201ENST00000549267 280 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC141257.3-201ENST00000572906 215 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 VN1R82P-201ENST00000601481 356 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC024220.1-201ENST00000603675 484 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC091946.2-201ENST00000606105 291 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 SNORA51-201ENST00000606420 132 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC005344.1-201ENST00000613391 459 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AC067852.7-201ENST00000623270 535 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 AP004289.2-201ENST00000444413 1457 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
USP41Q3LFD5 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP41Q3LFD5 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.21□□□□□ -1.74
USP41Q3LFD5 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.2□□□□□ -1.74
USP41Q3LFD5 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
USP41Q3LFD5 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP41Q3LFD5 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP41Q3LFD5 RNY3P9-201ENST00000384727 106 ntBASIC4.2□□□□□ -1.74
USP41Q3LFD5 MIR649-201ENST00000384843 97 ntBASIC4.2□□□□□ -1.74
USP41Q3LFD5 AC068533.2-201ENST00000411872 306 ntBASIC4.2□□□□□ -1.74
USP41Q3LFD5 RPS3AP9-201ENST00000417027 792 ntBASIC4.2□□□□□ -1.74
USP41Q3LFD5 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.2□□□□□ -1.74
USP41Q3LFD5 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC4.2□□□□□ -1.74
USP41Q3LFD5 RPL31P54-201ENST00000429803 370 ntBASIC4.2□□□□□ -1.74
USP41Q3LFD5 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.2□□□□□ -1.74
USP41Q3LFD5 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.2□□□□□ -1.74
USP41Q3LFD5 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.2□□□□□ -1.74
USP41Q3LFD5 NDUFS5P3-201ENST00000450668 321 ntBASIC4.2□□□□□ -1.74
USP41Q3LFD5 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.2□□□□□ -1.74
USP41Q3LFD5 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.2□□□□□ -1.74
USP41Q3LFD5 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USP41Q3LFD5 AC025554.1-201ENST00000505641 188 ntBASIC4.2□□□□□ -1.74
USP41Q3LFD5 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms