Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MTCO2P20-201ENST00000437339 673 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 HMGB3P8-201ENST00000449709 577 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.24□□□□□ -1.89
COL4A4P53420 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.24□□□□□ -1.89
COL4A4P53420 MTND2P6-201ENST00000455337 1030 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 FABP5P12-201ENST00000515543 389 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL4A4P53420 AC079600.2-201ENST00000550076 130 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 MIR5047-201ENST00000579212 100 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC080013.3-201ENST00000606839 578 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AC122108.2-201ENST00000611946 526 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AC009159.2-201ENST00000617603 606 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AC026585.1-201ENST00000619582 524 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
COL4A4P53420 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC3.24□□□□□ -1.89
COL4A4P53420 MIR22-201ENST00000362190 85 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 RNA5SP502-201ENST00000362694 119 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 RNU6-805P-201ENST00000365643 106 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 RNU6-650P-201ENST00000365658 111 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.24□□□□□ -1.89
COL4A4P53420 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 MIR34A-201ENST00000385130 110 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AL035405.1-201ENST00000400795 710 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 RSL24D1P4-201ENST00000400938 484 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.24□□□□□ -1.89
COL4A4P53420 MORF4L1P6-201ENST00000418771 268 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.24□□□□□ -1.89
COL4A4P53420 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 ELOCP11-201ENST00000436690 332 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 TXNP1-201ENST00000441872 371 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 RNFT1P2-201ENST00000443064 757 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 ELOCP16-201ENST00000444494 332 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A4P53420 AC106052.1-201ENST00000608029 497 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AC009159.1-201ENST00000618386 642 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
COL4A4P53420 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.23□□□□□ -1.89
COL4A4P53420 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.23□□□□□ -1.89
COL4A4P53420 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.23□□□□□ -1.89
COL4A4P53420 CR848007.2-201ENST00000424918 787 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A4P53420 AC112653.1-201ENST00000443851 386 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.23□□□□□ -1.89
COL4A4P53420 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.23□□□□□ -1.89
COL4A4P53420 TRBV12-1-201ENST00000479785 344 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 AC114781.4-201ENST00000513707 639 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC3.23□□□□□ -1.89
COL4A4P53420 DUXAP3-201ENST00000603616 594 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 GMCL1P2-201ENST00000605230 823 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.23□□□□□ -1.89
COL4A4P53420 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A4P53420 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A4P53420 AL049555.1-201ENST00000562834 1933 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 MTND5P24-201ENST00000438892 1767 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A4P53420 AC096656.1-201ENST00000623826 1364 ntBASIC3.23□□□□□ -1.89
COL4A4P53420 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
COL4A4P53420 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC3.22□□□□□ -1.89
COL4A4P53420 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
COL4A4P53420 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL4A4P53420 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL4A4P53420 SNORA9.2-201ENST00000365361 133 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 RNU6-883P-201ENST00000384597 107 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 CCNB2P1-201ENST00000399411 1150 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 RPL7P25-201ENST00000404151 721 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 DHFRP5-201ENST00000406944 564 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.22□□□□□ -1.89
COL4A4P53420 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.22□□□□□ -1.89
COL4A4P53420 AL645937.1-202ENST00000421799 937 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 MTND5P25-201ENST00000430499 799 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC3.22□□□□□ -1.89
COL4A4P53420 AL590762.3-201ENST00000436372 640 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.22□□□□□ -1.89
COL4A4P53420 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 AC010468.1-201ENST00000461022 817 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 AC108729.2-201ENST00000476543 840 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.22□□□□□ -1.89
COL4A4P53420 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 AC090888.2-201ENST00000559765 1144 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 CYCSP39-201ENST00000565821 309 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A4P53420 AC233266.2-201ENST00000567067 528 ntBASIC3.22□□□□□ -1.89
COL4A4P53420 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.22□□□□□ -1.89
COL4A4P53420 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms