Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 AC090971.4-201ENST00000560291 1800 ntBASIC4.74□□□□□ -1.65
MSX2P35548 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
MSX2P35548 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX2P35548 AC108751.5-201ENST00000492880 1336 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
MSX2P35548 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
MSX2P35548 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
MSX2P35548 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX2P35548 AC011155.1-201ENST00000316512 456 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RNU6-845P-201ENST00000362578 103 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RNA5SP319-201ENST00000362768 119 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RNU6-1322P-201ENST00000364309 107 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RNU1-39P-201ENST00000383897 165 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RNU6-952P-201ENST00000391164 108 ntBASIC4.73□□□□□ -1.65
MSX2P35548 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
MSX2P35548 RPL7P25-201ENST00000404151 721 ntBASIC4.73□□□□□ -1.65
MSX2P35548 MIR1302-11-201ENST00000408051 138 ntBASIC4.73□□□□□ -1.65
MSX2P35548 MIR1302-9-201ENST00000408365 138 ntBASIC4.73□□□□□ -1.65
MSX2P35548 MIR1302-10-201ENST00000408734 138 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RNA5SP118-201ENST00000410385 109 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX2P35548 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX2P35548 PDCL2P1-201ENST00000419302 352 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.73□□□□□ -1.65
MSX2P35548 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.73□□□□□ -1.65
MSX2P35548 AL035410.1-201ENST00000427409 427 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RPS26P40-201ENST00000435209 294 ntBASIC4.73□□□□□ -1.65
MSX2P35548 TAAR7P-201ENST00000436141 242 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RPL7P54-201ENST00000438336 674 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RPL22P17-201ENST00000438729 315 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX2P35548 ARPC3P5-201ENST00000448802 534 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.73□□□□□ -1.65
MSX2P35548 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
MSX2P35548 AC013356.1-201ENST00000489027 564 ntBASIC4.73□□□□□ -1.65
MSX2P35548 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.73□□□□□ -1.65
MSX2P35548 TMEM251P1-201ENST00000503717 318 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC034159.1-201ENST00000513885 583 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.73□□□□□ -1.65
MSX2P35548 HSPA8P13-201ENST00000523715 472 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC012339.2-201ENST00000523996 453 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC022832.1-201ENST00000530718 645 ntBASIC4.73□□□□□ -1.65
MSX2P35548 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.73□□□□□ -1.65
MSX2P35548 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.73□□□□□ -1.65
MSX2P35548 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.73□□□□□ -1.65
MSX2P35548 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX2P35548 HPRT1P3-201ENST00000539521 576 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.73□□□□□ -1.65
MSX2P35548 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.73□□□□□ -1.65
MSX2P35548 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX2P35548 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX2P35548 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX2P35548 NF1P5-201ENST00000588287 448 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC020910.2-201ENST00000603635 610 ntBASIC4.73□□□□□ -1.65
MSX2P35548 MIR1302-2-201ENST00000607096 138 ntBASIC4.73□□□□□ -1.65
MSX2P35548 RNU6-87P-201ENST00000607561 108 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.73□□□□□ -1.65
MSX2P35548 AC135068.12-201ENST00000637370 931 ntBASIC4.73□□□□□ -1.65
MSX2P35548 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
MSX2P35548 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX2P35548 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX2P35548 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.73□□□□□ -1.65
MSX2P35548 AC008079.2-201ENST00000623543 20396 ntBASIC4.73□□□□□ -1.65
MSX2P35548 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX2P35548 ERCC6-202ENST00000374127 1782 ntBASIC4.73□□□□□ -1.65
MSX2P35548 AC015813.6-201ENST00000624409 5808 ntBASIC4.73□□□□□ -1.65
MSX2P35548 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.72□□□□□ -1.65
MSX2P35548 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX2P35548 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
MSX2P35548 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX2P35548 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX2P35548 Y_RNA.162-201ENST00000363683 102 ntBASIC4.72□□□□□ -1.65
MSX2P35548 RN7SKP224-201ENST00000364140 325 ntBASIC4.72□□□□□ -1.65
MSX2P35548 RNU6-767P-201ENST00000384132 107 ntBASIC4.72□□□□□ -1.65
MSX2P35548 SNORA70.10-201ENST00000384515 134 ntBASIC4.72□□□□□ -1.65
MSX2P35548 SNORA66-201ENST00000384792 133 ntBASIC4.72□□□□□ -1.65
MSX2P35548 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX2P35548 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX2P35548 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX2P35548 LYPLA1P1-201ENST00000434514 622 ntBASIC4.72□□□□□ -1.65
MSX2P35548 RPS20P1-201ENST00000434853 354 ntBASIC4.72□□□□□ -1.65
MSX2P35548 AC012075.1-201ENST00000436549 580 ntBASIC4.72□□□□□ -1.65
MSX2P35548 HMGB3P12-201ENST00000438745 556 ntBASIC4.72□□□□□ -1.65
MSX2P35548 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX2P35548 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC4.72□□□□□ -1.65
MSX2P35548 RPL36AP39-201ENST00000445859 318 ntBASIC4.72□□□□□ -1.65
MSX2P35548 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.72□□□□□ -1.65
MSX2P35548 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX2P35548 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSX2P35548 RN7SL177P-201ENST00000476596 299 ntBASIC4.72□□□□□ -1.65
MSX2P35548 RPS4XP14-201ENST00000493072 781 ntBASIC4.72□□□□□ -1.65
MSX2P35548 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
MSX2P35548 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX2P35548 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
MSX2P35548 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.72□□□□□ -1.65
MSX2P35548 AC112191.2-201ENST00000522428 333 ntBASIC4.72□□□□□ -1.65
MSX2P35548 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 178.6 ms