Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC084198.1-201ENST00000477747 402 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC008885.2-201ENST00000509506 930 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 MTND1P22-201ENST00000510572 951 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 RN7SKP31-201ENST00000516354 278 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC007991.1-201ENST00000522680 631 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AF279873.1-201ENST00000523393 313 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 UBE2NP1-201ENST00000545592 458 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 CLPTM1LP1-201ENST00000604519 484 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AL163642.2-201ENST00000604722 1019 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 OR2AS2P-201ENST00000606902 342 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC233309.1-201ENST00000619522 751 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AL607023.1-201ENST00000620045 248 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AL161637.1-201ENST00000622380 412 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 AC073348.1-201ENST00000623002 331 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.12□□□□□ -1.75
SIX4Q9UIU6 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.12□□□□□ -1.75
SIX4Q9UIU6 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 ELL2P3-201ENST00000457883 1602 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AL391994.1-201ENST00000254724 282 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 RNU6-1200P-201ENST00000384162 107 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 SNORA51.12-201ENST00000384448 134 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 SNORD116-23-201ENST00000384645 92 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AL133264.1-201ENST00000407157 562 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 RPL23AP47-201ENST00000408017 460 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 RN7SKP156-201ENST00000410308 342 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 RN7SKP159-201ENST00000410657 292 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 JKAMPP1-201ENST00000413804 919 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AL139247.1-201ENST00000422768 325 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 NPM1P34-201ENST00000428821 893 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC087650.1-201ENST00000431445 468 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AL445584.1-201ENST00000431451 330 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 SNORA71B-202ENST00000439232 272 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 MTND1P16-201ENST00000465177 898 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC139783.2-201ENST00000504847 1145 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 HMGB3P13-201ENST00000511263 607 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC117532.1-201ENST00000514638 323 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 RNA5SP208-201ENST00000516156 78 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 MYL12AP1-201ENST00000518490 515 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 HIGD1AP6-201ENST00000521833 279 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC022695.1-201ENST00000522089 237 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 MIR4716-201ENST00000579628 84 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 OR4K7P-201ENST00000580232 945 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC103881.1-201ENST00000603476 538 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC009220.3-201ENST00000604318 586 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 AC068254.2-201ENST00000623938 3577 ntBASIC4.11□□□□□ -1.75
SIX4Q9UIU6 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SIX4Q9UIU6 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
SIX4Q9UIU6 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.1□□□□□ -1.75
SIX4Q9UIU6 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.1□□□□□ -1.75
SIX4Q9UIU6 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SIX4Q9UIU6 AL512646.1-201ENST00000269395 1077 ntBASIC4.1□□□□□ -1.75
SIX4Q9UIU6 OR4A15-201ENST00000314706 1035 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms