Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR1321-201ENST00000637766 79 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
USP39Q53GS9 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP39Q53GS9 AC100871.1-201ENST00000507871 1456 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 ZNF652P1-201ENST00000442420 1309 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP39Q53GS9 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 ZNF37BP-203ENST00000452306 1352 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 MAPK10-304ENST00000641341 3984 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.92□□□□□ -1.62
USP39Q53GS9 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
USP39Q53GS9 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.92□□□□□ -1.62
USP39Q53GS9 AC063976.2-201ENST00000425667 3556 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.92□□□□□ -1.62
USP39Q53GS9 GTF2H2B-203ENST00000508065 1432 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 RNU6-98P-201ENST00000384173 107 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.92□□□□□ -1.62
USP39Q53GS9 RPL23AP47-201ENST00000408017 460 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 MIR1302-11-201ENST00000408051 138 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 MIR1302-9-201ENST00000408365 138 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 MIR1302-10-201ENST00000408734 138 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 Y_RNA.598-201ENST00000410480 95 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC109780.2-201ENST00000413467 845 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC007390.1-201ENST00000415722 356 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 RPS27AP14-201ENST00000422868 454 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
USP39Q53GS9 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.92□□□□□ -1.62
USP39Q53GS9 NDUFA5P4-201ENST00000436704 385 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 AC092013.1-201ENST00000438795 332 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 PGBD4P3-201ENST00000440731 581 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.92□□□□□ -1.62
USP39Q53GS9 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.92□□□□□ -1.62
USP39Q53GS9 RN7SL441P-201ENST00000492388 296 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC105914.1-201ENST00000511798 226 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 Y_RNA.675-201ENST00000516389 149 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 Y_RNA.704-201ENST00000516851 102 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC105031.1-201ENST00000518550 476 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 FAM92A1P1-201ENST00000528023 890 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.92□□□□□ -1.62
USP39Q53GS9 AC068714.1-201ENST00000559623 800 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 NDUFB4P11-201ENST00000560510 395 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC018552.3-201ENST00000567416 561 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.92□□□□□ -1.62
USP39Q53GS9 AC091488.1-201ENST00000604239 660 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 MIR1302-2-201ENST00000607096 138 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC090948.2-201ENST00000607363 564 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 AC008250.2-201ENST00000615261 205 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC092650.2-201ENST00000619984 902 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AL139089.1-201ENST00000620372 975 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC002550.2-201ENST00000621246 394 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 AC006065.6-201ENST00000625201 545 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.92□□□□□ -1.62
USP39Q53GS9 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.92□□□□□ -1.62
USP39Q53GS9 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
USP39Q53GS9 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 AL731532.2-201ENST00000623542 1953 ntBASIC4.92□□□□□ -1.62
USP39Q53GS9 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
USP39Q53GS9 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.92□□□□□ -1.62
USP39Q53GS9 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
USP39Q53GS9 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.92□□□□□ -1.62
USP39Q53GS9 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP39Q53GS9 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
USP39Q53GS9 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.91□□□□□ -1.62
USP39Q53GS9 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP39Q53GS9 AC010928.1-201ENST00000592477 1447 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AC090229.1-201ENST00000590983 1609 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AL590240.1-201ENST00000334118 313 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP39Q53GS9 AC019155.1-201ENST00000382242 574 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 RNU6-723P-201ENST00000383973 107 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USP39Q53GS9 RNU4-55P-201ENST00000410731 137 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 CTSL3P-202ENST00000412179 788 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AMD1P2-201ENST00000412936 992 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 FCF1P2-201ENST00000415284 583 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 RPS3AP9-201ENST00000417027 792 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 USP9YP27-201ENST00000418455 438 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.91□□□□□ -1.62
USP39Q53GS9 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms