Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXF1Q12946 MIR3200-201ENST00000580767 85 ntBASIC2.69□□□□□ -1.98
FOXF1Q12946 AC017100.2-201ENST00000584628 355 ntBASIC2.69□□□□□ -1.98
FOXF1Q12946 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXF1Q12946 MIR7973-1-201ENST00000614683 76 ntBASIC2.69□□□□□ -1.98
FOXF1Q12946 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
FOXF1Q12946 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXF1Q12946 AC084035.1-201ENST00000634543 607 ntBASIC2.69□□□□□ -1.98
FOXF1Q12946 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXF1Q12946 AC007342.9-201ENST00000623877 1385 ntBASIC2.69□□□□□ -1.98
FOXF1Q12946 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXF1Q12946 MTND5P19-201ENST00000424872 1794 ntBASIC2.69□□□□□ -1.98
FOXF1Q12946 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
FOXF1Q12946 AC000403.1-201ENST00000613696 3585 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
FOXF1Q12946 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXF1Q12946 SNORA48.5-201ENST00000391143 135 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXF1Q12946 AL445528.1-201ENST00000426330 420 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC2.68□□□□□ -1.98
FOXF1Q12946 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXF1Q12946 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXF1Q12946 AC022018.1-201ENST00000430685 241 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 XKRYP6-201ENST00000440468 1116 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 XKRYP3-201ENST00000442113 1116 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 AL353898.1-201ENST00000444055 238 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 AC023512.1-201ENST00000444513 499 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 RPL37P4-201ENST00000448908 268 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 PTGES3P5-201ENST00000455109 434 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
FOXF1Q12946 OR5G4P-201ENST00000525251 760 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXF1Q12946 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXF1Q12946 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.68□□□□□ -1.98
FOXF1Q12946 AP001180.3-201ENST00000582221 145 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 AC015871.2-201ENST00000603605 948 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 AC022387.2-201ENST00000604050 448 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
FOXF1Q12946 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 MIR4278-201ENST00000636094 69 ntBASIC2.68□□□□□ -1.98
FOXF1Q12946 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
FOXF1Q12946 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
FOXF1Q12946 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXF1Q12946 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXF1Q12946 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXF1Q12946 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXF1Q12946 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXF1Q12946 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
FOXF1Q12946 MTND5P7-201ENST00000413558 1798 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 AL035425.3-201ENST00000564206 4996 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXF1Q12946 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXF1Q12946 MIR128-1-201ENST00000384921 82 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXF1Q12946 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
FOXF1Q12946 AC244505.4-201ENST00000434905 287 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
FOXF1Q12946 AL031663.1-201ENST00000437445 219 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXF1Q12946 CBX1P4-201ENST00000439415 457 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC2.67□□□□□ -1.98
FOXF1Q12946 SSXP5-201ENST00000443473 287 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 HMGB1P26-201ENST00000452520 628 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.67□□□□□ -1.98
FOXF1Q12946 RPS20P32-201ENST00000456044 356 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXF1Q12946 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXF1Q12946 OR5H4P-201ENST00000510851 923 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 RNU6-1004P-201ENST00000516584 111 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
FOXF1Q12946 AP004242.1-201ENST00000533701 349 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC2.67□□□□□ -1.98
FOXF1Q12946 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXF1Q12946 AC074029.2-201ENST00000551045 634 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 OR4T1P-201ENST00000554933 911 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 GTF2IP8-201ENST00000560687 584 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
FOXF1Q12946 AC006270.2-201ENST00000578523 652 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 CR392039.4-201ENST00000624968 501 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 AP001002.2-201ENST00000625137 386 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 AC119674.1-220ENST00000641502 1048 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
FOXF1Q12946 AC021755.1-201ENST00000559747 1447 ntBASIC2.67□□□□□ -1.98
FOXF1Q12946 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.66□□□□□ -1.98
FOXF1Q12946 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXF1Q12946 RNU1-140P-201ENST00000365040 165 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 SNORA9.2-201ENST00000365361 133 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 MIR591-201ENST00000385290 95 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 SNORA48.8-201ENST00000391324 134 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 DHFRP5-201ENST00000406944 564 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXF1Q12946 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXF1Q12946 AC244453.4-201ENST00000419150 388 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 RPL35AP12-201ENST00000425362 338 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 DUTP6-201ENST00000425573 462 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 AC093151.1-201ENST00000427711 313 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 RPL23AP83-201ENST00000434984 473 ntBASIC2.66□□□□□ -1.98
FOXF1Q12946 CYCSP32-201ENST00000440548 321 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms