Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC2.64□□□□□ -1.99
CHD3Q12873 MTND2P17-201ENST00000550281 688 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AL161713.1-201ENST00000555538 145 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 MIR4458-201ENST00000578872 75 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 MIR4524B-201ENST00000581569 115 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.64□□□□□ -1.99
CHD3Q12873 AC067852.4-201ENST00000590314 478 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 VN1R90P-201ENST00000595717 726 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CHD3Q12873 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 AC104446.1-201ENST00000613728 1321 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CHD3Q12873 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC2.64□□□□□ -1.99
CHD3Q12873 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CHD3Q12873 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC2.64□□□□□ -1.99
CHD3Q12873 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 HMGB3P11-201ENST00000440127 604 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC2.64□□□□□ -1.99
CHD3Q12873 CASP3P1-201ENST00000446037 609 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CHD3Q12873 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.64□□□□□ -1.99
CHD3Q12873 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.64□□□□□ -1.99
CHD3Q12873 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC2.64□□□□□ -1.99
CHD3Q12873 AL390838.2-201ENST00000602394 274 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 ATP1B3P1-201ENST00000605365 821 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AC231759.1-201ENST00000616455 597 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CHD3Q12873 AC139713.2-210ENST00000641741 992 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AC093831.2-201ENST00000624393 3427 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CHD3Q12873 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CHD3Q12873 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
CHD3Q12873 AC002546.1-201ENST00000588041 2504 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 FER-202ENST00000438717 1531 ntTSL 2 BASIC2.63□□□□□ -1.99
CHD3Q12873 U3.6-201ENST00000363622 211 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 AC007563.3-201ENST00000433233 371 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 FTH1P1-201ENST00000437933 532 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 CACYBPP1-201ENST00000438592 684 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 RPL21P18-201ENST00000469899 480 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 MTND4LP22-201ENST00000508209 276 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.63□□□□□ -1.99
CHD3Q12873 SNORA70.19-201ENST00000516717 90 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.63□□□□□ -1.99
CHD3Q12873 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC2.63□□□□□ -1.99
CHD3Q12873 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.63□□□□□ -1.99
CHD3Q12873 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.63□□□□□ -1.99
CHD3Q12873 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.63□□□□□ -1.99
CHD3Q12873 AP003072.5-201ENST00000623872 773 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CHD3Q12873 AC008264.2-201ENST00000610193 3731 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.63□□□□□ -1.99
CHD3Q12873 CRP-202ENST00000368110 667 ntTSL 3 BASIC2.63□□□□□ -1.99
CHD3Q12873 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CHD3Q12873 RSL24D1P4-201ENST00000400938 484 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 AL592148.1-201ENST00000413568 445 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC2.63□□□□□ -1.99
CHD3Q12873 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.63□□□□□ -1.99
CHD3Q12873 AC019097.1-201ENST00000424783 735 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 AC012181.1-201ENST00000479895 423 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 AC078817.1-201ENST00000492623 435 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 RNA5SP356-201ENST00000515972 94 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.63□□□□□ -1.99
CHD3Q12873 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC2.63□□□□□ -1.99
CHD3Q12873 OR4T1P-201ENST00000554933 911 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.63□□□□□ -1.99
CHD3Q12873 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.63□□□□□ -1.99
CHD3Q12873 RPL12P50-201ENST00000603116 116 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.63□□□□□ -1.99
CHD3Q12873 OR5BR1P-201ENST00000524992 1330 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 AC009313.2-201ENST00000417893 1941 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CHD3Q12873 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CHD3Q12873 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
CHD3Q12873 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
CHD3Q12873 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
CHD3Q12873 CD2-201ENST00000369477 478 ntTSL 2 BASIC2.62□□□□□ -1.99
CHD3Q12873 OR13C3-201ENST00000374781 1108 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 SNORA70B-201ENST00000384210 135 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 SNORA46-201ENST00000384762 135 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 RPS4XP8-201ENST00000402039 771 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC2.62□□□□□ -1.99
CHD3Q12873 TOMM20P4-201ENST00000427861 435 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 YWHAZP7-201ENST00000436906 631 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 AC126389.1-201ENST00000477436 290 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.62□□□□□ -1.99
CHD3Q12873 RN7SKP60-201ENST00000516985 239 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC2.62□□□□□ -1.99
CHD3Q12873 AC007536.1-201ENST00000533382 349 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.62□□□□□ -1.99
CHD3Q12873 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 AL096803.3-201ENST00000609032 532 ntBASIC2.62□□□□□ -1.99
CHD3Q12873 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.62□□□□□ -1.99
CHD3Q12873 MIR6733-201ENST00000635723 61 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms