Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 SLC31A1P1-201ENST00000451221 567 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 UBDP1-202ENST00000457888 382 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 AC069499.1-201ENST00000489433 509 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 HMGB1P28-201ENST00000507778 552 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 AC008837.2-201ENST00000513076 418 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD13P35453 RNU6-311P-201ENST00000516224 102 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 MTND2P32-201ENST00000521584 1038 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD13P35453 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD13P35453 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD13P35453 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD13P35453 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD13P35453 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD13P35453 AC006270.2-201ENST00000578523 652 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 OR4K7P-201ENST00000580232 945 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 AC022662.1-201ENST00000580252 331 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD13P35453 CCDC58P3-201ENST00000590792 430 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 AL606490.9-201ENST00000603331 271 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 AL451074.6-201ENST00000608512 729 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 AP001002.2-201ENST00000625137 386 ntBASIC4.22□□□□□ -1.73
HOXD13P35453 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HOXD13P35453 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.22□□□□□ -1.73
HOXD13P35453 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
HOXD13P35453 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
HOXD13P35453 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 SNRPEP3-201ENST00000338402 276 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 RNA5SP479-201ENST00000364858 117 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 ARF4P3-201ENST00000397387 509 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD13P35453 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 AL513174.1-201ENST00000423182 629 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 NIPA2P1-201ENST00000426223 976 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 USP9YP11-201ENST00000427537 717 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 MTND4P6-201ENST00000438297 472 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 ELOCP13-201ENST00000443934 329 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD13P35453 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 OFD1P3Y-201ENST00000453312 783 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD13P35453 VN1R105P-201ENST00000486595 910 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AC108941.1-201ENST00000502853 530 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AC114981.1-201ENST00000503897 678 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 BTF3L4P4-201ENST00000506381 449 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AC010460.1-201ENST00000507087 466 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 PRELID3BP5-201ENST00000508612 460 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 FTH1P9-201ENST00000513251 355 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD13P35453 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD13P35453 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXD13P35453 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD13P35453 AC107016.1-201ENST00000550463 337 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD13P35453 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD13P35453 AL360157.1-201ENST00000565962 87 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD13P35453 AC053481.4-201ENST00000583164 216 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD13P35453 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 MTND3P19-201ENST00000603825 345 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AC124312.4-201ENST00000605533 310 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 SNORA62.6-201ENST00000606322 83 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AL139089.1-201ENST00000620372 975 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD13P35453 AL078595.3-201ENST00000623815 1166 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 U6.101-201ENST00000637707 76 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 AC027287.1-201ENST00000553115 1453 ntBASIC4.21□□□□□ -1.74
HOXD13P35453 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD13P35453 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD13P35453 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD13P35453 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXD13P35453 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
HOXD13P35453 RN7SKP280-201ENST00000364196 304 ntBASIC4.2□□□□□ -1.74
HOXD13P35453 SNORA7.2-201ENST00000364446 145 ntBASIC4.2□□□□□ -1.74
HOXD13P35453 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.2□□□□□ -1.74
HOXD13P35453 CYP4F29P-201ENST00000420685 446 ntBASIC4.2□□□□□ -1.74
HOXD13P35453 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD13P35453 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD13P35453 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD13P35453 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.2□□□□□ -1.74
HOXD13P35453 PTENP1-201ENST00000447117 1215 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms