Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AL603865.2-201ENST00000401679 213 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RPL21P65-201ENST00000406094 466 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AL591034.1-201ENST00000407447 340 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 MIR1193-201ENST00000408109 78 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RNU2-15P-201ENST00000410692 191 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 OR8F1P-201ENST00000425243 930 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 OR5BE1P-201ENST00000425977 939 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 MTCYBP31-201ENST00000438855 1122 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RPS4XP4-201ENST00000443195 763 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RFC5P1-201ENST00000454419 874 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RPL23AP31-201ENST00000456160 467 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 SUMO2P2-201ENST00000456482 255 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RPS23P3-201ENST00000470993 430 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RPS3AP6-201ENST00000484430 795 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 KLHL2P1-201ENST00000508691 521 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RNU6-1095P-201ENST00000516148 108 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 SNORA31.8-201ENST00000516327 108 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 OR4P1P-201ENST00000530808 1136 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AC125611.1-201ENST00000549563 229 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 MIR5708-201ENST00000579723 85 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AC114878.2-201ENST00000604863 1251 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AL451044.1-201ENST00000604867 238 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AL391497.1-201ENST00000608671 547 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 OR5BE1P-202ENST00000641168 1176 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 LINC02471-203ENST00000641941 4752 ntBASIC5.2□□□□□ -1.58
CHMP4AQ9BY43 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 RNA5SP388-201ENST00000362584 119 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 SNORD35B-201ENST00000363660 87 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 Y_RNA.578-201ENST00000390903 88 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AL445189.1-201ENST00000405722 338 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 EIF4EP1-201ENST00000422311 642 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 SEPT7P5-201ENST00000434048 306 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC079203.1-201ENST00000487972 404 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC010460.1-201ENST00000507087 466 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC010376.1-201ENST00000522101 334 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AP000619.3-201ENST00000535634 1127 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC126177.3-201ENST00000551839 688 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC122134.1-202ENST00000569111 1201 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC053481.4-201ENST00000583164 216 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC067959.1-201ENST00000604334 379 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC010975.3-201ENST00000618727 978 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AC015967.1-201ENST00000619893 476 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 AP002371.2-201ENST00000624450 503 ntBASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP4AQ9BY43 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AL161912.2-201ENST00000565707 3007 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 SNORA3C-201ENST00000408792 125 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AC004552.1-201ENST00000419089 348 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 GTF2IP7-202ENST00000436677 309 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 HLA-N-201ENST00000437516 135 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 Z95327.1-201ENST00000446082 482 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 VN1R10P-201ENST00000447106 875 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms