Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 RPL9P7-201ENST00000330965 580 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 RNU6-185P-201ENST00000384421 107 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 RPL23AP47-201ENST00000408017 460 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 U3.42-201ENST00000408746 214 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 EI24P1-201ENST00000416584 867 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 AL353678.1-201ENST00000422735 741 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 AL390023.1-201ENST00000428836 262 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 NDUFA5P10-201ENST00000432147 357 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 AL590103.1-201ENST00000434488 307 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 RPS29P6-201ENST00000438196 145 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 HIGD1AP11-201ENST00000438361 280 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 RPS27AP1-201ENST00000475545 471 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 RPS4XP13-201ENST00000483219 789 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 RN7SKP272-201ENST00000516988 232 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 OR5G4P-201ENST00000525251 760 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 SYF2P1-201ENST00000550658 413 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 MIR548Y-201ENST00000582739 110 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 AL606834.2-201ENST00000602954 668 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC42Q96M95 AL035425.3-201ENST00000564206 4996 ntBASIC3.18□□□□□ -1.9
CCDC42Q96M95 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
CCDC42Q96M95 RNU1-35P-201ENST00000362782 153 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 RNA5SP391-201ENST00000363456 119 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 SNORA62.3-201ENST00000365110 153 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 MIR181B1-201ENST00000385240 110 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC42Q96M95 AL590290.1-201ENST00000405336 380 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 SNORD88.1-201ENST00000408684 91 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 RPL26P37-201ENST00000411983 438 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC42Q96M95 AL139281.1-201ENST00000422120 335 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC005300.1-201ENST00000428401 373 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC42Q96M95 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC006994.1-201ENST00000438212 839 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 RPL21P2-201ENST00000440049 481 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 RPL23AP33-201ENST00000442301 452 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 RPS15AP1-201ENST00000457423 391 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC091153.1-201ENST00000466297 402 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 RN7SKP157-201ENST00000516174 282 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC42Q96M95 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC42Q96M95 MIR5680-201ENST00000577577 84 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC006504.3-201ENST00000586818 523 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC42Q96M95 AL627309.6-201ENST00000606857 840 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC009039.2-201ENST00000624524 529 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 LRRC77P-213ENST00000637727 880 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC010733.2-201ENST00000589496 5702 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 OR5BR1P-201ENST00000524992 1330 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC42Q96M95 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.17□□□□□ -1.9
CCDC42Q96M95 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC42Q96M95 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC026951.1-201ENST00000559530 2459 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 SNORA7.2-201ENST00000364446 145 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 U3.19-201ENST00000390893 196 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 SNORA11B-201ENST00000408175 129 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 VDAC1P3-201ENST00000434069 851 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 RPL21P112-201ENST00000434403 463 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC091862.1-201ENST00000438016 1100 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 HMGB1P12-201ENST00000438594 598 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AL162389.1-201ENST00000449233 177 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 HMGN2P16-201ENST00000456802 261 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 BTF3P5-201ENST00000457252 467 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 RPS4XP10-201ENST00000465034 731 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 NCOR1P1-202ENST00000486162 291 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 RN7SKP244-201ENST00000516513 307 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 FAM60DP-201ENST00000524174 632 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms