Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 OTUD4P1-201ENST00000237841 3067 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 RNA5SP235-201ENST00000365411 114 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 RNU6-629P-201ENST00000384061 103 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC007066.1-201ENST00000392902 381 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AL583834.1-201ENST00000406943 343 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 RNA5SP306-201ENST00000411087 107 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC245052.5-201ENST00000416320 649 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 MTND2P11-201ENST00000423638 648 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 KCTD9P3-201ENST00000434597 1169 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 SEPT14P24-201ENST00000447236 180 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AL034418.1-201ENST00000448675 860 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC010285.1-201ENST00000470580 392 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 RPS17P11-201ENST00000474297 293 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 RPL31P61-201ENST00000496160 376 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 HMGB3P15-201ENST00000507326 574 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 USP9YP5-201ENST00000511770 630 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 HMGN1P15-201ENST00000513870 295 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC007991.1-201ENST00000522680 631 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC012182.1-201ENST00000570133 895 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC011471.1-201ENST00000585766 187 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC244505.7-201ENST00000599675 272 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 GAS5-AS1-201ENST00000602767 694 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC093875.1-201ENST00000623688 504 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 AC006963.1-201ENST00000624003 1052 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 ZNF962P-201ENST00000443465 3140 ntBASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.81□□□□□ -1.8
HDDC3Q8N4P3 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 TCEA1P2-201ENST00000420496 906 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AL391219.1-201ENST00000422570 483 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 FO393414.1-201ENST00000428697 1184 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AL159987.2-201ENST00000432754 307 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 PPIAP17-201ENST00000438507 471 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 TPTE2P3-201ENST00000441562 1189 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AL096829.2-201ENST00000446582 742 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 TRBV26-201ENST00000456572 344 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 GTF2IP8-201ENST00000560687 584 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AP001542.2-201ENST00000593141 364 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AL031985.2-201ENST00000600955 480 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC011468.4-201ENST00000603942 409 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC128687.2-201ENST00000609657 566 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AC084824.5-201ENST00000612009 413 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AL359715.5-201ENST00000623431 443 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 AP001148.1-201ENST00000624124 2359 ntBASIC3.8□□□□□ -1.8
HDDC3Q8N4P3 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 RPL22P22-201ENST00000395439 379 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AL139098.1-201ENST00000407291 389 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 MTCO3P12-201ENST00000416718 547 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 RPL7P28-201ENST00000437739 740 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 RPS3AP46-201ENST00000448352 682 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC007967.1-201ENST00000455422 1159 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms