Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC140479.3-201ENST00000418944 1126 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 COX6CP15-201ENST00000426313 211 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC073335.1-201ENST00000427776 363 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL132765.1-201ENST00000434165 553 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL354941.1-201ENST00000438600 464 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 VN1R10P-201ENST00000447106 875 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MTCO1P48-201ENST00000448024 1096 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MTND2P14-201ENST00000482139 351 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 TMEM248P1-201ENST00000510579 951 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MTCYBP37-201ENST00000510642 1133 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 NDUFB4P9-201ENST00000511646 388 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC016065.2-201ENST00000514530 444 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC027309.2-201ENST00000520566 192 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC025884.1-201ENST00000556034 378 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC087465.1-201ENST00000560574 245 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 RPL23AP97-201ENST00000568955 471 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC107982.3-201ENST00000584957 985 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC103881.1-201ENST00000603476 538 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC025588.3-201ENST00000604182 274 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 DPRXP5-201ENST00000604662 539 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC069200.1-201ENST00000609511 323 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MTND2P41-201ENST00000637599 773 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MTND5P28-201ENST00000438005 1594 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC066616.2-201ENST00000559334 1481 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
PDLIM3Q53GG5 ELL2P4-201ENST00000446870 1376 ntBASIC3.65□□□□□ -1.82
PDLIM3Q53GG5 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
PDLIM3Q53GG5 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
PDLIM3Q53GG5 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
PDLIM3Q53GG5 LINC00622-201ENST00000562811 1570 ntBASIC3.65□□□□□ -1.82
PDLIM3Q53GG5 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.65□□□□□ -1.82
PDLIM3Q53GG5 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AL157700.1-201ENST00000561973 1432 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 RNU1-63P-201ENST00000383902 164 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 RNU6-1122P-201ENST00000384449 107 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 ENSAP1-201ENST00000392855 326 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 SSXP10-201ENST00000402595 565 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 PPIAP31-201ENST00000405422 495 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AL023807.1-201ENST00000407932 359 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AL450338.1-201ENST00000407987 512 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 RNU2-37P-201ENST00000410695 177 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC092647.1-201ENST00000420654 287 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 SDCBPP2-201ENST00000424643 885 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 MTCYBP34-201ENST00000439552 670 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 RPS26P56-201ENST00000444468 240 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 VN1R32P-201ENST00000452234 905 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 ART2BP-201ENST00000453501 499 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 HMGN2P7-201ENST00000456186 273 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC079804.1-201ENST00000461922 436 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 RPS7P7-201ENST00000463499 571 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 RPL7P49-201ENST00000471402 708 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC068305.1-201ENST00000497406 726 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 SNORA74D-201ENST00000516404 141 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 ARL2BPP5-201ENST00000523141 481 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 SLC2A13P1-201ENST00000531560 322 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC008127.2-201ENST00000549925 1075 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC009712.1-201ENST00000564938 316 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC084783.1-201ENST00000565846 910 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 RN7SL652P-201ENST00000577769 300 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC090616.5-202ENST00000582111 297 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 VN1R82P-201ENST00000601481 356 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms