Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 DHFRP6-201ENST00000401776 268 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 RNU2-66P-201ENST00000410650 161 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 RPL31P2-201ENST00000413849 377 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 Z97055.1-201ENST00000419730 712 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC016712.1-201ENST00000431088 378 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AL357520.1-201ENST00000441557 453 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 MTND1P27-201ENST00000451117 902 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 RPS20P21-201ENST00000466859 343 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC017015.1-201ENST00000477387 286 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 LARP1BP2-201ENST00000486594 519 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 MTND2P33-201ENST00000506452 1031 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 RN7SKP82-201ENST00000516786 223 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AP003392.2-201ENST00000527269 208 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC013828.2-201ENST00000532487 235 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 MIR4528-201ENST00000577763 90 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 MTND1P15-201ENST00000579262 949 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 MIR544B-201ENST00000582372 78 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 MIR4307-201ENST00000582802 84 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC073091.2-201ENST00000603205 907 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC103710.4-201ENST00000609301 899 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC108479.2-201ENST00000617314 601 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AL445264.1-201ENST00000621719 171 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC015908.5-201ENST00000623289 343 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 CYP3A51P-201ENST00000633513 256 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 AC114546.3-201ENST00000623582 1734 ntBASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
PTCHD3Q3KNS1 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 DDX18P3-201ENST00000404856 2007 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC126755.2-208ENST00000327792 462 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC138969.1-213ENST00000331436 462 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 SNORA70F-201ENST00000384142 135 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 SNORD96B-201ENST00000386148 79 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 U8.14-201ENST00000390843 143 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 MIR921-201ENST00000401133 56 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 Z98745.1-201ENST00000402553 494 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 Y_RNA.598-201ENST00000410480 95 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 RN7SKP33-201ENST00000410942 340 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 UBE2V1P10-201ENST00000414685 269 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 OFD1P18Y-201ENST00000420889 959 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 MTCO2P5-201ENST00000422621 426 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 RPL30P3-201ENST00000424262 333 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 C4BPAP2-201ENST00000428434 478 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 PDSS1P2-201ENST00000449397 678 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 RPL7P31-201ENST00000450192 724 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AL033528.1-201ENST00000453780 140 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 NIP7P2-201ENST00000485801 544 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AK3P4-201ENST00000504283 583 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC022861.1-201ENST00000522981 663 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 OR5AP1P-201ENST00000529730 940 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AC245505.1-201ENST00000556398 224 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 ZNF519P3-201ENST00000557158 1032 ntBASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.48□□□□□ -1.69
PTCHD3Q3KNS1 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms