Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL358176.3-201ENST00000420757 454 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AL451054.2-201ENST00000420896 202 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AC018630.2-202ENST00000422992 927 ntBASIC5.2□□□□□ -1.58
RNF4P78317 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.2□□□□□ -1.58
RNF4P78317 TMEM183AP1-205ENST00000432739 290 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AC239809.1-201ENST00000450470 217 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AC010733.1-201ENST00000451515 401 ntBASIC5.2□□□□□ -1.58
RNF4P78317 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.2□□□□□ -1.58
RNF4P78317 RPL21P99-201ENST00000480369 423 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.2□□□□□ -1.58
RNF4P78317 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.2□□□□□ -1.58
RNF4P78317 AC016065.2-201ENST00000514530 444 ntBASIC5.2□□□□□ -1.58
RNF4P78317 Y_RNA.665-201ENST00000516177 98 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.2□□□□□ -1.58
RNF4P78317 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.2□□□□□ -1.58
RNF4P78317 AC100784.1-201ENST00000522790 310 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.2□□□□□ -1.58
RNF4P78317 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.2□□□□□ -1.58
RNF4P78317 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
RNF4P78317 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.2□□□□□ -1.58
RNF4P78317 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.2□□□□□ -1.58
RNF4P78317 AL589674.2-201ENST00000604304 337 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.2□□□□□ -1.58
RNF4P78317 AC103710.2-201ENST00000609912 942 ntBASIC5.2□□□□□ -1.58
RNF4P78317 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.2□□□□□ -1.58
RNF4P78317 AC123768.4-201ENST00000616244 701 ntBASIC5.2□□□□□ -1.58
RNF4P78317 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AL355480.1-201ENST00000629041 99 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AC027228.2-201ENST00000567141 2154 ntBASIC5.2□□□□□ -1.58
RNF4P78317 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.2□□□□□ -1.58
RNF4P78317 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
RNF4P78317 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 AP004289.2-201ENST00000444413 1457 ntBASIC5.2□□□□□ -1.58
RNF4P78317 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.19□□□□□ -1.58
RNF4P78317 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC5.19□□□□□ -1.58
RNF4P78317 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 MTND4P27-201ENST00000450813 1354 ntBASIC5.19□□□□□ -1.58
RNF4P78317 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
RNF4P78317 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 IARS-201ENST00000375627 697 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 Y_RNA.387-201ENST00000383918 102 ntBASIC5.19□□□□□ -1.58
RNF4P78317 RNU6-641P-201ENST00000384006 107 ntBASIC5.19□□□□□ -1.58
RNF4P78317 MIR558-201ENST00000384920 94 ntBASIC5.19□□□□□ -1.58
RNF4P78317 MIR143-201ENST00000385300 106 ntBASIC5.19□□□□□ -1.58
RNF4P78317 MIR454-201ENST00000390180 115 ntBASIC5.19□□□□□ -1.58
RNF4P78317 SNORA75.4-201ENST00000391278 119 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AC005042.1-201ENST00000393397 800 ntBASIC5.19□□□□□ -1.58
RNF4P78317 RNU4-26P-201ENST00000410270 107 ntBASIC5.19□□□□□ -1.58
RNF4P78317 RNU2-50P-201ENST00000410494 143 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AC096921.1-201ENST00000411661 375 ntBASIC5.19□□□□□ -1.58
RNF4P78317 HMGN2P27-201ENST00000427352 270 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AL590399.2-201ENST00000427536 309 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AL121776.1-201ENST00000429337 372 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 MTATP6P16-201ENST00000434543 526 ntBASIC5.19□□□□□ -1.58
RNF4P78317 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
RNF4P78317 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.19□□□□□ -1.58
RNF4P78317 RPS15AP36-201ENST00000492022 382 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AL139099.1-201ENST00000497398 403 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AC110792.2-201ENST00000510278 224 ntBASIC5.19□□□□□ -1.58
RNF4P78317 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC5.19□□□□□ -1.58
RNF4P78317 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.19□□□□□ -1.58
RNF4P78317 RN7SKP256-201ENST00000517201 314 ntBASIC5.19□□□□□ -1.58
RNF4P78317 TRMT10BP1-201ENST00000519377 943 ntBASIC5.19□□□□□ -1.58
RNF4P78317 RPL7P20-201ENST00000520308 745 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC5.19□□□□□ -1.58
RNF4P78317 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.19□□□□□ -1.58
RNF4P78317 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 AC124068.1-201ENST00000563131 678 ntBASIC5.19□□□□□ -1.58
RNF4P78317 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.19□□□□□ -1.58
RNF4P78317 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 AC103710.3-201ENST00000608157 948 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 AL590099.1-201ENST00000615276 138 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AC025574.2-201ENST00000615621 514 ntBASIC5.19□□□□□ -1.58
RNF4P78317 MIR6729-201ENST00000618194 65 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 152.1 ms