Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC113398.2-201ENST00000507630 558 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC2.27□□□□□ -2.05
FOXA3P55318 AC098799.2-201ENST00000509466 868 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 RNA5SP468-201ENST00000516782 93 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA3P55318 AADACP1-206ENST00000561502 1193 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA3P55318 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA3P55318 RN7SL339P-201ENST00000580597 296 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 MIR548Y-201ENST00000582739 110 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA3P55318 FAM60CP-201ENST00000591086 664 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC2.27□□□□□ -2.05
FOXA3P55318 AC096947.1-201ENST00000603233 470 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AL451086.1-201ENST00000605596 223 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AC005972.3-201ENST00000606304 481 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA3P55318 AL359198.2-201ENST00000611836 194 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AC022509.4-201ENST00000621404 572 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA3P55318 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA3P55318 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.27□□□□□ -2.05
FOXA3P55318 Z83843.1-201ENST00000604070 3685 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 FAM35BP-202ENST00000497389 3337 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.26□□□□□ -2.05
FOXA3P55318 RPL9P7-201ENST00000330965 580 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 RNU6-50P-201ENST00000362356 103 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 RNU6-1181P-201ENST00000384191 106 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 AC063979.1-201ENST00000415539 377 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 SSXP9-201ENST00000417503 292 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 RSL24D1P6-201ENST00000426934 401 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA3P55318 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA3P55318 RPL23AP58-201ENST00000440453 469 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 NOTCH2P1-201ENST00000443481 624 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.26□□□□□ -2.05
FOXA3P55318 PRDX3P4-201ENST00000470828 747 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.26□□□□□ -2.05
FOXA3P55318 AC108120.2-201ENST00000512973 294 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 AC109635.4-202ENST00000531666 412 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 HSPE1P20-201ENST00000538133 289 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC2.26□□□□□ -2.05
FOXA3P55318 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC2.26□□□□□ -2.05
FOXA3P55318 AC007224.1-201ENST00000564410 144 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA3P55318 AC007448.1-201ENST00000582714 234 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 MIR4276-201ENST00000584832 70 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC2.26□□□□□ -2.05
FOXA3P55318 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA3P55318 AL590282.1-201ENST00000610379 1136 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 AL020991.1-201ENST00000612314 373 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 MIR622-201ENST00000638396 96 ntBASIC2.26□□□□□ -2.05
FOXA3P55318 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.26□□□□□ -2.05
FOXA3P55318 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA3P55318 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA3P55318 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.25□□□□□ -2.05
FOXA3P55318 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA3P55318 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA3P55318 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA3P55318 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
FOXA3P55318 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC2.25□□□□□ -2.05
FOXA3P55318 METTL21EP-201ENST00000298105 713 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AC068538.1-201ENST00000376856 336 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AL359837.1-201ENST00000381357 287 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
FOXA3P55318 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA3P55318 RPL7P25-201ENST00000404151 721 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 METTL5-204ENST00000409340 472 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA3P55318 RNU4-65P-201ENST00000410473 140 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 RPL19P1-201ENST00000411635 428 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 HSFY4P-201ENST00000415994 1181 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA3P55318 AL445528.1-201ENST00000426330 420 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA3P55318 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA3P55318 ELOCP13-201ENST00000443934 329 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA3P55318 AC009220.1-201ENST00000451614 275 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AL445669.2-201ENST00000454425 421 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA3P55318 RPL9P33-201ENST00000484311 566 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 RPL21P131-201ENST00000497298 483 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA3P55318 AC111000.2-201ENST00000507775 550 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA3P55318 HIGD1AP3-201ENST00000515857 278 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA3P55318 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.25□□□□□ -2.05
FOXA3P55318 MTND2P26-201ENST00000528255 1029 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 ARL6IP1P1-201ENST00000545836 610 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 RPL21P12-201ENST00000559810 515 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA3P55318 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA3P55318 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA3P55318 AC022916.3-201ENST00000592961 742 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA3P55318 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA3P55318 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA3P55318 AC091057.2-201ENST00000602594 792 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms