Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
LIG3P49916 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIG3P49916 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LIG3P49916 RNA5SP487-201ENST00000410186 122 ntBASIC5.65□□□□□ -1.5
LIG3P49916 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC5.65□□□□□ -1.5
LIG3P49916 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.65□□□□□ -1.5
LIG3P49916 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG3P49916 AL133173.1-201ENST00000423458 397 ntBASIC5.65□□□□□ -1.5
LIG3P49916 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.65□□□□□ -1.5
LIG3P49916 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.65□□□□□ -1.5
LIG3P49916 CYCSP12-201ENST00000437729 300 ntBASIC5.65□□□□□ -1.5
LIG3P49916 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG3P49916 NOP56P2-201ENST00000447491 769 ntBASIC5.65□□□□□ -1.5
LIG3P49916 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG3P49916 AC233702.1-201ENST00000482905 502 ntBASIC5.65□□□□□ -1.5
LIG3P49916 RPS3AP50-201ENST00000487064 803 ntBASIC5.65□□□□□ -1.5
LIG3P49916 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC5.65□□□□□ -1.5
LIG3P49916 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG3P49916 AC040958.1-201ENST00000561102 201 ntBASIC5.65□□□□□ -1.5
LIG3P49916 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC5.65□□□□□ -1.5
LIG3P49916 MRPS21P7-201ENST00000566937 238 ntBASIC5.65□□□□□ -1.5
LIG3P49916 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.65□□□□□ -1.5
LIG3P49916 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG3P49916 KC877982.1-201ENST00000602313 470 ntBASIC5.65□□□□□ -1.5
LIG3P49916 NANOGP3-201ENST00000605855 286 ntBASIC5.65□□□□□ -1.5
LIG3P49916 OR6R2P-201ENST00000609216 300 ntBASIC5.65□□□□□ -1.5
LIG3P49916 AC105429.2-201ENST00000610567 517 ntBASIC5.65□□□□□ -1.5
LIG3P49916 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG3P49916 uc_338.12-201ENST00000616344 181 ntBASIC5.65□□□□□ -1.5
LIG3P49916 AL354950.2-201ENST00000617939 290 ntBASIC5.65□□□□□ -1.5
LIG3P49916 MIR6886-201ENST00000619864 61 ntBASIC5.65□□□□□ -1.5
LIG3P49916 AL159972.1-201ENST00000625150 448 ntBASIC5.65□□□□□ -1.5
LIG3P49916 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
LIG3P49916 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.65□□□□□ -1.51
LIG3P49916 Z95331.1-201ENST00000623075 23112 ntBASIC5.65□□□□□ -1.51
LIG3P49916 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.65□□□□□ -1.51
LIG3P49916 AC100778.3-201ENST00000580060 1750 ntBASIC5.65□□□□□ -1.51
LIG3P49916 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
LIG3P49916 AC009902.3-201ENST00000606235 2172 ntBASIC5.65□□□□□ -1.51
LIG3P49916 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.64□□□□□ -1.51
LIG3P49916 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIG3P49916 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.64□□□□□ -1.51
LIG3P49916 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.64□□□□□ -1.51
LIG3P49916 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIG3P49916 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIG3P49916 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIG3P49916 RNU4-79P-201ENST00000362764 141 ntBASIC5.64□□□□□ -1.51
LIG3P49916 SNORA63-201ENST00000363450 132 ntBASIC5.64□□□□□ -1.51
LIG3P49916 RN7SKP124-201ENST00000364730 341 ntBASIC5.64□□□□□ -1.51
LIG3P49916 MIR143-201ENST00000385300 106 ntBASIC5.64□□□□□ -1.51
LIG3P49916 RPL21P67-201ENST00000402896 478 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AL591416.1-201ENST00000404015 867 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AL162578.1-201ENST00000406202 378 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC5.64□□□□□ -1.51
LIG3P49916 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.64□□□□□ -1.51
LIG3P49916 COX5BP7-201ENST00000414780 274 ntBASIC5.64□□□□□ -1.51
LIG3P49916 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.64□□□□□ -1.51
LIG3P49916 RPL35AP12-201ENST00000425362 338 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.64□□□□□ -1.51
LIG3P49916 DDX3P2-201ENST00000446138 111 ntBASIC5.64□□□□□ -1.51
LIG3P49916 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AL450023.1-201ENST00000450868 751 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AL356010.1-201ENST00000456364 102 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AC021146.1-201ENST00000511202 716 ntBASIC5.64□□□□□ -1.51
LIG3P49916 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.64□□□□□ -1.51
LIG3P49916 SCARNA15.1-201ENST00000516384 125 ntBASIC5.64□□□□□ -1.51
LIG3P49916 SCARNA24.1-201ENST00000516465 137 ntBASIC5.64□□□□□ -1.51
LIG3P49916 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.64□□□□□ -1.51
LIG3P49916 NRBF2P4-201ENST00000520874 850 ntBASIC5.64□□□□□ -1.51
LIG3P49916 OR5B19P-201ENST00000531766 928 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC5.64□□□□□ -1.51
LIG3P49916 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.64□□□□□ -1.51
LIG3P49916 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 AC078814.3-201ENST00000553036 491 ntBASIC5.64□□□□□ -1.51
LIG3P49916 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC5.64□□□□□ -1.51
LIG3P49916 AC010525.2-201ENST00000590920 195 ntBASIC5.64□□□□□ -1.51
LIG3P49916 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIG3P49916 AC010424.2-201ENST00000607594 443 ntBASIC5.64□□□□□ -1.51
LIG3P49916 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIG3P49916 AL138820.1-201ENST00000617901 5305 ntBASIC5.64□□□□□ -1.51
LIG3P49916 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIG3P49916 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
LIG3P49916 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIG3P49916 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
LIG3P49916 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 AC006020.1-201ENST00000420179 1854 ntBASIC5.63□□□□□ -1.51
LIG3P49916 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms