Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
HNF4AP41235 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
HNF4AP41235 AC111188.2-201ENST00000529697 1387 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
HNF4AP41235 HMGB1P5-201ENST00000255320 642 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 OR11H4-201ENST00000315409 1082 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.92□□□□□ -1.78
HNF4AP41235 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.92□□□□□ -1.78
HNF4AP41235 RNU6-906P-201ENST00000384700 70 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 AL024474.1-201ENST00000404655 591 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 AL133264.1-201ENST00000407157 562 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 AC092634.2-201ENST00000428146 1010 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.92□□□□□ -1.78
HNF4AP41235 USP9YP24-201ENST00000434374 697 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.92□□□□□ -1.78
HNF4AP41235 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.92□□□□□ -1.78
HNF4AP41235 USP9YP17-201ENST00000444617 696 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 RPS20P24-201ENST00000457473 361 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 RPL6P9-201ENST00000466502 859 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 PABPC1P3-201ENST00000469174 459 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 NIPA2P2-201ENST00000496376 1083 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.92□□□□□ -1.78
HNF4AP41235 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.92□□□□□ -1.78
HNF4AP41235 RNU6-1028P-201ENST00000517164 93 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.92□□□□□ -1.78
HNF4AP41235 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HNF4AP41235 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.92□□□□□ -1.78
HNF4AP41235 AL121603.1-201ENST00000553815 142 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.92□□□□□ -1.78
HNF4AP41235 AC022968.1-201ENST00000567372 442 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.92□□□□□ -1.78
HNF4AP41235 AC024060.1-201ENST00000607052 494 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.92□□□□□ -1.78
HNF4AP41235 AC009464.1-201ENST00000615731 469 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 AL355493.4-201ENST00000618530 292 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.92□□□□□ -1.78
HNF4AP41235 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HNF4AP41235 ZNF663P-202ENST00000641770 1131 ntBASIC3.92□□□□□ -1.78
HNF4AP41235 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HNF4AP41235 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HNF4AP41235 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.92□□□□□ -1.78
HNF4AP41235 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.92□□□□□ -1.78
HNF4AP41235 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HNF4AP41235 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.91□□□□□ -1.78
HNF4AP41235 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.91□□□□□ -1.78
HNF4AP41235 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HNF4AP41235 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HNF4AP41235 SNORD82-201ENST00000365530 70 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AC068538.1-201ENST00000376856 336 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HNF4AP41235 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.91□□□□□ -1.78
HNF4AP41235 RNU6-328P-201ENST00000390887 106 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 RPS26P8-201ENST00000393490 348 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HNF4AP41235 RPL7P27-201ENST00000403775 720 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.91□□□□□ -1.78
HNF4AP41235 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.91□□□□□ -1.78
HNF4AP41235 AC027644.1-201ENST00000419595 298 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AL159169.1-201ENST00000421119 127 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 OR5BE1P-201ENST00000425977 939 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 RPL31P54-201ENST00000429803 370 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 GTF2IP3-201ENST00000433887 494 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.91□□□□□ -1.78
HNF4AP41235 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.91□□□□□ -1.78
HNF4AP41235 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.91□□□□□ -1.78
HNF4AP41235 RN7SL385P-201ENST00000468873 276 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.91□□□□□ -1.78
HNF4AP41235 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.91□□□□□ -1.78
HNF4AP41235 AC093767.1-201ENST00000504523 156 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 BOLA3P3-201ENST00000505182 232 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.91□□□□□ -1.78
HNF4AP41235 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.91□□□□□ -1.78
HNF4AP41235 RNU6-311P-201ENST00000516224 102 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 snoZ278.1-201ENST00000517059 112 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AC023632.1-201ENST00000518463 375 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.91□□□□□ -1.78
HNF4AP41235 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.91□□□□□ -1.78
HNF4AP41235 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.91□□□□□ -1.78
HNF4AP41235 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.91□□□□□ -1.78
HNF4AP41235 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.91□□□□□ -1.78
HNF4AP41235 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.91□□□□□ -1.78
HNF4AP41235 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.91□□□□□ -1.78
HNF4AP41235 MTCYBP27-201ENST00000555160 670 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 GNRHR2P1-201ENST00000555315 631 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AC025884.1-201ENST00000556034 378 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 PARP1P2-201ENST00000556806 195 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HNF4AP41235 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.91□□□□□ -1.78
HNF4AP41235 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HNF4AP41235 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.91□□□□□ -1.78
HNF4AP41235 AC022022.2-201ENST00000602989 360 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AL159169.3-201ENST00000608871 561 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 PART1_2.1-201ENST00000612397 250 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.91□□□□□ -1.78
HNF4AP41235 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.91□□□□□ -1.78
HNF4AP41235 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HNF4AP41235 AC092650.2-201ENST00000619984 902 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 MIR6810-201ENST00000622701 70 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AC010608.2-201ENST00000624830 470 ntBASIC3.91□□□□□ -1.78
HNF4AP41235 AC026634.1-201ENST00000634369 198 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms