Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL18A1P39060 AL138787.1-202ENST00000437804 898 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL18A1P39060 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL18A1P39060 snoU13.23-201ENST00000458863 104 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.51□□□□□ -1.85
COL18A1P39060 AC017007.3-201ENST00000479865 435 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 AC005921.1-201ENST00000510589 286 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 AC008837.1-201ENST00000511513 412 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 RNU6-991P-201ENST00000516168 107 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL18A1P39060 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.51□□□□□ -1.85
COL18A1P39060 ZNF861P-201ENST00000588126 639 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.51□□□□□ -1.85
COL18A1P39060 AC005046.1-201ENST00000608515 625 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL18A1P39060 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
COL18A1P39060 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL18A1P39060 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
COL18A1P39060 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL18A1P39060 AC093831.2-201ENST00000624393 3427 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL18A1P39060 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL18A1P39060 MRPS33P4-201ENST00000434892 317 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 HMGB1P18-201ENST00000438801 619 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 RPL23AP23-201ENST00000452590 471 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.51□□□□□ -1.85
COL18A1P39060 AC107015.1-201ENST00000466902 747 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.51□□□□□ -1.85
COL18A1P39060 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.51□□□□□ -1.85
COL18A1P39060 AC018797.3-201ENST00000513388 1241 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.51□□□□□ -1.85
COL18A1P39060 RPS27AP18-201ENST00000515536 459 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.51□□□□□ -1.85
COL18A1P39060 AC009163.5-201ENST00000575421 637 ntBASIC3.51□□□□□ -1.85
COL18A1P39060 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL18A1P39060 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL18A1P39060 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL18A1P39060 FAM133CP-201ENST00000332869 704 ntBASIC3.5□□□□□ -1.85
COL18A1P39060 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.5□□□□□ -1.85
COL18A1P39060 RPL21P3-201ENST00000395517 478 ntBASIC3.5□□□□□ -1.85
COL18A1P39060 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.5□□□□□ -1.85
COL18A1P39060 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.5□□□□□ -1.85
COL18A1P39060 AC146507.2-201ENST00000460608 476 ntBASIC3.5□□□□□ -1.85
COL18A1P39060 RN7SL75P-201ENST00000461926 281 ntBASIC3.5□□□□□ -1.85
COL18A1P39060 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.5□□□□□ -1.85
COL18A1P39060 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.5□□□□□ -1.85
COL18A1P39060 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.5□□□□□ -1.85
COL18A1P39060 AC007621.1-201ENST00000604544 437 ntBASIC3.5□□□□□ -1.85
COL18A1P39060 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.5□□□□□ -1.85
COL18A1P39060 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.5□□□□□ -1.85
COL18A1P39060 AL031985.3-201ENST00000565390 2449 ntBASIC3.5□□□□□ -1.85
COL18A1P39060 AC022031.1-201ENST00000585985 2593 ntBASIC3.5□□□□□ -1.85
COL18A1P39060 AC092079.1-201ENST00000558620 1985 ntBASIC3.49□□□□□ -1.85
COL18A1P39060 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.49□□□□□ -1.85
COL18A1P39060 AC093278.1-201ENST00000494700 600 ntBASIC3.49□□□□□ -1.85
COL18A1P39060 RPS29P21-201ENST00000496272 170 ntBASIC3.49□□□□□ -1.85
COL18A1P39060 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.49□□□□□ -1.85
COL18A1P39060 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.49□□□□□ -1.85
COL18A1P39060 AC025034.2-201ENST00000623264 286 ntBASIC3.49□□□□□ -1.85
COL18A1P39060 AC079228.1-201ENST00000624774 1049 ntBASIC3.49□□□□□ -1.85
COL18A1P39060 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.49□□□□□ -1.85
COL18A1P39060 AC004972.1-201ENST00000623934 2209 ntBASIC3.49□□□□□ -1.85
COL18A1P39060 AC005332.5-201ENST00000591222 2919 ntBASIC3.49□□□□□ -1.85
COL18A1P39060 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.49□□□□□ -1.85
COL18A1P39060 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL18A1P39060 AC093908.1-201ENST00000623125 8092 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 SNORA36C-201ENST00000384289 132 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 HMGB3P23-201ENST00000414981 585 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.48□□□□□ -1.85
COL18A1P39060 Y_RNA.676-201ENST00000516393 96 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AP003102.1-201ENST00000525638 661 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AC234775.3-201ENST00000564612 656 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 MIR4635-201ENST00000583759 79 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AC022960.2-201ENST00000616300 666 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 U7.8-201ENST00000619968 63 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.48□□□□□ -1.85
COL18A1P39060 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.48□□□□□ -1.85
COL18A1P39060 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.48□□□□□ -1.85
COL18A1P39060 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.48□□□□□ -1.85
COL18A1P39060 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.48□□□□□ -1.85
COL18A1P39060 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
COL18A1P39060 RNU6-1320P-201ENST00000390838 107 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 RNU6-1269P-201ENST00000391139 107 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 BX276092.3-201ENST00000424182 230 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 FCF1P1-201ENST00000432690 571 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 HMGB3P10-201ENST00000434734 572 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.48□□□□□ -1.85
COL18A1P39060 RPL23AP15-201ENST00000450202 459 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 RNU6-599P-201ENST00000459383 107 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 RNU6-1193P-201ENST00000459461 107 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 OR5H5P-201ENST00000503164 928 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC3.48□□□□□ -1.85
COL18A1P39060 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.48□□□□□ -1.85
COL18A1P39060 AL391156.1-201ENST00000554965 554 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AL121839.1-201ENST00000556233 1185 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.48□□□□□ -1.85
COL18A1P39060 RNU6-368P-201ENST00000620928 107 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 RNU6-538P-201ENST00000622329 107 ntBASIC3.48□□□□□ -1.85
COL18A1P39060 AC241585.2-209ENST00000638217 143 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms