Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 Z73965.1-201ENST00000623412 2297 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXD3P31249 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC3.79□□□□□ -1.8
HOXD3P31249 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD3P31249 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 RPL23AP57-201ENST00000332361 466 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 RNU6-1243P-201ENST00000364028 107 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 RNY4P34-201ENST00000364779 95 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 SNORA62-201ENST00000365493 153 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXD3P31249 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
HOXD3P31249 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 RPL17P50-201ENST00000396131 546 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 AC069218.2-201ENST00000411665 344 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD3P31249 RPL36AP36-201ENST00000418616 301 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC093414.1-201ENST00000434712 514 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 MTND6P13-201ENST00000443510 523 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXD3P31249 SLC25A18P1-201ENST00000449385 454 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC003071.1-201ENST00000451219 789 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC010733.1-201ENST00000451515 401 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD3P31249 USP9YP34-201ENST00000453983 808 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 TRBV26-201ENST00000456572 344 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC245028.2-201ENST00000458673 253 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 PLGLA-201ENST00000465668 449 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 RN7SL385P-201ENST00000468873 276 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXD3P31249 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXD3P31249 MTAPP1-201ENST00000489154 819 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXD3P31249 AC091133.4-201ENST00000511142 308 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD3P31249 KCTD9P2-201ENST00000512203 1013 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC024589.1-201ENST00000512207 263 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC022483.1-201ENST00000514020 567 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 RNU6-430P-201ENST00000517078 107 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD3P31249 AC022861.1-201ENST00000522981 663 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXD3P31249 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXD3P31249 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXD3P31249 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD3P31249 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD3P31249 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 RPL21P5-201ENST00000554662 472 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC092325.1-201ENST00000566449 554 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 MIR5186-201ENST00000577504 120 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC127024.5-201ENST00000580085 462 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 MIR4660-201ENST00000583549 74 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 HMGN1P30-201ENST00000589286 268 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 AC103792.1-201ENST00000603591 919 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC104687.2-201ENST00000604442 342 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 AC090517.2-201ENST00000614966 680 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 AC110994.2-201ENST00000635481 492 ntBASIC3.79□□□□□ -1.8
HOXD3P31249 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD3P31249 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD3P31249 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
HOXD3P31249 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
HOXD3P31249 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HOXD3P31249 AC130650.2-201ENST00000618736 2403 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 OR52B1P-201ENST00000316506 909 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC079741.1-201ENST00000321498 212 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC126755.2-208ENST00000327792 462 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC138969.1-213ENST00000331436 462 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 RNA5SP332-201ENST00000391063 115 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 SNORD115-47-201ENST00000391226 86 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms