Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RPL7P27-201ENST00000403775 720 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AL024507.1-201ENST00000412741 274 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.7□□□□□ -1.82
PTPN4P29074 PAICSP7-201ENST00000419829 962 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.7□□□□□ -1.82
PTPN4P29074 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.7□□□□□ -1.82
PTPN4P29074 ARF4P4-201ENST00000439608 520 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AC000041.1-201ENST00000439655 175 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 TXNP1-201ENST00000441872 371 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AC006539.3-201ENST00000454258 129 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 RPL23AP62-201ENST00000463396 453 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 RPL6P9-201ENST00000466502 859 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.7□□□□□ -1.82
PTPN4P29074 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.7□□□□□ -1.82
PTPN4P29074 ACTG1P13-201ENST00000486987 1043 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.7□□□□□ -1.82
PTPN4P29074 RN7SKP157-201ENST00000516174 282 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.7□□□□□ -1.82
PTPN4P29074 PDCL2P2-201ENST00000533651 189 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.7□□□□□ -1.82
PTPN4P29074 CYB5AP5-201ENST00000549779 389 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.7□□□□□ -1.82
PTPN4P29074 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.7□□□□□ -1.82
PTPN4P29074 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.7□□□□□ -1.82
PTPN4P29074 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AC010872.1-201ENST00000624225 675 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 AC004777.1-201ENST00000624317 287 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.7□□□□□ -1.82
PTPN4P29074 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.7□□□□□ -1.82
PTPN4P29074 AC000367.1-201ENST00000452711 1766 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTPN4P29074 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.7□□□□□ -1.82
PTPN4P29074 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.7□□□□□ -1.82
PTPN4P29074 AC116096.1-201ENST00000566804 2314 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTPN4P29074 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.69□□□□□ -1.82
PTPN4P29074 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN4P29074 RNU5B-1-201ENST00000363286 116 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 SNORA73.2-201ENST00000364946 201 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 RNU6-1257P-201ENST00000384625 110 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 MIR23A-201ENST00000385245 73 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 RNU6-837P-201ENST00000391056 108 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN4P29074 AL355143.1-201ENST00000407101 841 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN4P29074 AC006989.1-201ENST00000427212 131 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AC096632.1-201ENST00000427395 310 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN4P29074 AL158071.1-201ENST00000430315 461 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN4P29074 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN4P29074 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN4P29074 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
PTPN4P29074 HMGB1P12-201ENST00000438594 598 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN4P29074 RNU7-170P-201ENST00000459303 61 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 NAP1L1P3-201ENST00000462291 880 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 SYPL1P1-201ENST00000473622 768 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.69□□□□□ -1.82
PTPN4P29074 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN4P29074 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN4P29074 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN4P29074 AC087369.1-201ENST00000520775 996 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AP001207.1-201ENST00000524051 481 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 OR4A12P-201ENST00000530847 918 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.69□□□□□ -1.82
PTPN4P29074 AC011602.1-201ENST00000546484 331 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN4P29074 EIF5A2P1-201ENST00000564027 460 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AC012182.1-201ENST00000570133 895 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AC074051.3-201ENST00000570238 358 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 MTCO1P40-201ENST00000574371 625 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.69□□□□□ -1.82
PTPN4P29074 AP001542.2-201ENST00000593141 364 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AP002802.2-201ENST00000605877 235 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN4P29074 AC018645.2-201ENST00000609151 472 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN4P29074 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN4P29074 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN4P29074 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN4P29074 AF001550.2-201ENST00000636643 217 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN4P29074 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.69□□□□□ -1.82
PTPN4P29074 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN4P29074 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN4P29074 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
PTPN4P29074 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
PTPN4P29074 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN4P29074 RNU6-600P-201ENST00000362524 99 ntBASIC3.68□□□□□ -1.82
PTPN4P29074 RNU5B-4P-201ENST00000363508 111 ntBASIC3.68□□□□□ -1.82
PTPN4P29074 MIR7-3-201ENST00000384898 110 ntBASIC3.68□□□□□ -1.82
PTPN4P29074 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
PTPN4P29074 AL121978.1-201ENST00000402778 359 ntBASIC3.68□□□□□ -1.82
PTPN4P29074 RNU2-71P-201ENST00000411395 189 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms