Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
MSX1P28360 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX1P28360 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
MSX1P28360 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX1P28360 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
MSX1P28360 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX1P28360 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 AC104966.1-201ENST00000467010 1464 ntBASIC5.79□□□□□ -1.48
MSX1P28360 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX1P28360 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 OR56A5-201ENST00000340110 738 ntBASIC5.79□□□□□ -1.48
MSX1P28360 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 Y_RNA.376-201ENST00000365638 108 ntBASIC5.79□□□□□ -1.48
MSX1P28360 RNU6-306P-201ENST00000384617 107 ntBASIC5.79□□□□□ -1.48
MSX1P28360 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
MSX1P28360 GCNT1P4-201ENST00000404096 329 ntBASIC5.79□□□□□ -1.48
MSX1P28360 RNA5SP107-201ENST00000411358 122 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AC069218.2-201ENST00000411665 344 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AL035422.1-201ENST00000414193 397 ntBASIC5.79□□□□□ -1.48
MSX1P28360 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX1P28360 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 AL358176.3-201ENST00000420757 454 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AL590135.1-201ENST00000422215 156 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX1P28360 PIGPP3-201ENST00000425307 415 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AC016027.5-201ENST00000427227 210 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 AC092162.1-201ENST00000432828 434 ntBASIC5.79□□□□□ -1.48
MSX1P28360 MRPS18BP2-201ENST00000434310 759 ntBASIC5.79□□□□□ -1.48
MSX1P28360 RPS17P8-201ENST00000434525 335 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AC096775.1-201ENST00000437724 448 ntBASIC5.79□□□□□ -1.48
MSX1P28360 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX1P28360 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 RPL23AP60-201ENST00000450011 454 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.79□□□□□ -1.48
MSX1P28360 MTND4LP30-201ENST00000454092 297 ntBASIC5.79□□□□□ -1.48
MSX1P28360 VPS25P1-201ENST00000455691 508 ntBASIC5.79□□□□□ -1.48
MSX1P28360 SETP20-201ENST00000457046 852 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AC245028.2-201ENST00000458673 253 ntBASIC5.79□□□□□ -1.48
MSX1P28360 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX1P28360 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 GM2AP2-201ENST00000491764 562 ntBASIC5.79□□□□□ -1.48
MSX1P28360 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.79□□□□□ -1.48
MSX1P28360 AC097486.1-201ENST00000515331 210 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 AP005639.1-201ENST00000526939 192 ntBASIC5.79□□□□□ -1.48
MSX1P28360 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.79□□□□□ -1.48
MSX1P28360 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
MSX1P28360 AL133271.1-201ENST00000538229 291 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX1P28360 AC079600.1-201ENST00000550326 297 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AL049779.3-201ENST00000557141 606 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX1P28360 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.79□□□□□ -1.48
MSX1P28360 AC008521.1-201ENST00000587471 187 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AC005332.4-201ENST00000592752 579 ntBASIC5.79□□□□□ -1.48
MSX1P28360 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 AL138895.2-201ENST00000603019 178 ntBASIC5.79□□□□□ -1.48
MSX1P28360 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.79□□□□□ -1.48
MSX1P28360 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 AC096772.1-201ENST00000609146 564 ntBASIC5.79□□□□□ -1.48
MSX1P28360 MIR7159-201ENST00000620587 66 ntBASIC5.79□□□□□ -1.48
MSX1P28360 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX1P28360 AL512643.1-201ENST00000635735 524 ntBASIC5.79□□□□□ -1.48
MSX1P28360 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
MSX1P28360 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX1P28360 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX1P28360 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX1P28360 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
MSX1P28360 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.78□□□□□ -1.48
MSX1P28360 SNORD8-201ENST00000363915 110 ntBASIC5.78□□□□□ -1.48
MSX1P28360 SNORD82-201ENST00000365530 70 ntBASIC5.78□□□□□ -1.48
MSX1P28360 Y_RNA.785-201ENST00000384290 109 ntBASIC5.78□□□□□ -1.48
MSX1P28360 Y_RNA.478-201ENST00000384358 107 ntBASIC5.78□□□□□ -1.48
MSX1P28360 SNORA16.2-201ENST00000390991 127 ntBASIC5.78□□□□□ -1.48
MSX1P28360 SNORA77.2-201ENST00000408571 112 ntBASIC5.78□□□□□ -1.48
MSX1P28360 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 CYP4F30P-202ENST00000420048 405 ntBASIC5.78□□□□□ -1.48
MSX1P28360 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 RPL23AP38-201ENST00000423801 469 ntBASIC5.78□□□□□ -1.48
MSX1P28360 FAR2P4-202ENST00000425399 584 ntBASIC5.78□□□□□ -1.48
MSX1P28360 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms