Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNA5SP65-201ENST00000363166 119 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 Y_RNA.183-201ENST00000363882 113 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 Y_RNA.199-201ENST00000364014 102 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 Y_RNA.304-201ENST00000365011 112 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 EIF5P1-201ENST00000400019 1231 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 HMGB1P20-201ENST00000402555 677 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AL138885.1-201ENST00000405921 675 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.48□□□□□ -1.53
COL8A1P27658 DUTP4-201ENST00000424782 475 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC091286.1-201ENST00000431233 461 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.48□□□□□ -1.53
COL8A1P27658 RPL36AP6-201ENST00000435770 321 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.48□□□□□ -1.53
COL8A1P27658 HMGN3P1-201ENST00000453847 193 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC116533.1-201ENST00000459748 321 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 DYNLL1P5-201ENST00000467158 270 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 UBA52P7-201ENST00000486088 380 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 RPL17P19-201ENST00000489069 552 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 RN7SL466P-201ENST00000497546 295 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 RPS26P24-201ENST00000497656 331 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC074198.2-201ENST00000508153 258 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 RNU6-1332P-201ENST00000516666 104 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 RNU6-861P-201ENST00000516745 106 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 AC027667.1-201ENST00000545814 304 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC090115.3-201ENST00000553218 849 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC022884.2-201ENST00000578535 580 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 AC060771.1-201ENST00000582031 164 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 VN1R91P-201ENST00000594377 169 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.48□□□□□ -1.53
COL8A1P27658 AL390123.1-201ENST00000603216 237 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 MIR7973-1-201ENST00000614683 76 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AP000843.1-201ENST00000624880 701 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 AC116667.2-201ENST00000641075 823 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AL596275.2-208ENST00000641192 594 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.48□□□□□ -1.53
COL8A1P27658 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
COL8A1P27658 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 AC011460.1-201ENST00000636268 1834 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
COL8A1P27658 AL161901.1-201ENST00000624954 3425 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 AC009779.8-201ENST00000641684 4384 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC5.48□□□□□ -1.53
COL8A1P27658 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.47□□□□□ -1.53
COL8A1P27658 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
COL8A1P27658 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL8A1P27658 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC5.47□□□□□ -1.53
COL8A1P27658 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 AL355488.2-201ENST00000609909 2850 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL8A1P27658 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 Y_RNA.8-201ENST00000362353 102 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 Y_RNA.105-201ENST00000363182 111 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 RNU6-1059P-201ENST00000363752 98 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 RNU6-842P-201ENST00000384269 107 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 RNU6-1156P-201ENST00000410365 100 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 RNU6-121P-201ENST00000410525 99 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 RPL37P18-201ENST00000411602 243 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 UBE2D3P2-201ENST00000424409 445 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 RPL23AP4-201ENST00000427757 463 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 AC108734.1-201ENST00000439549 399 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.47□□□□□ -1.53
COL8A1P27658 AC108059.3-201ENST00000456388 214 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.47□□□□□ -1.53
COL8A1P27658 RPS14P8-201ENST00000478778 369 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 RN7SL714P-201ENST00000487050 298 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 RPS4XP23-201ENST00000487801 237 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 AC008953.1-201ENST00000497334 318 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL8A1P27658 CYCSP22-201ENST00000517555 339 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.47□□□□□ -1.53
COL8A1P27658 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.47□□□□□ -1.53
COL8A1P27658 DYNLL1P4-201ENST00000549314 266 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.47□□□□□ -1.53
COL8A1P27658 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.47□□□□□ -1.53
COL8A1P27658 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.47□□□□□ -1.53
COL8A1P27658 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.47□□□□□ -1.53
COL8A1P27658 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.47□□□□□ -1.53
COL8A1P27658 AC073410.2-201ENST00000603240 332 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms