Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.32□□□□□ -1.4
RFX1P22670 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RFX1P22670 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.32□□□□□ -1.4
RFX1P22670 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.32□□□□□ -1.4
RFX1P22670 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC6.32□□□□□ -1.4
RFX1P22670 AC067945.1-201ENST00000342609 618 ntBASIC6.32□□□□□ -1.4
RFX1P22670 MIR375-201ENST00000362103 64 ntBASIC6.32□□□□□ -1.4
RFX1P22670 U3.7-201ENST00000363668 216 ntBASIC6.32□□□□□ -1.4
RFX1P22670 Y_RNA.384-201ENST00000383909 102 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AL136372.1-201ENST00000403060 228 ntBASIC6.32□□□□□ -1.4
RFX1P22670 RNU6-516P-201ENST00000411381 104 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC6.32□□□□□ -1.4
RFX1P22670 BX284632.2-201ENST00000421091 399 ntBASIC6.32□□□□□ -1.4
RFX1P22670 BX323845.3-201ENST00000428215 527 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AP000281.1-201ENST00000444036 316 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AL359955.2-201ENST00000445380 353 ntBASIC6.32□□□□□ -1.4
RFX1P22670 IGKV1OR-3-201ENST00000446944 348 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AC005008.1-201ENST00000456151 612 ntBASIC6.32□□□□□ -1.4
RFX1P22670 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.32□□□□□ -1.4
RFX1P22670 RN7SL515P-201ENST00000463999 297 ntBASIC6.32□□□□□ -1.4
RFX1P22670 RN7SL189P-201ENST00000468631 289 ntBASIC6.32□□□□□ -1.4
RFX1P22670 SIAH1P1-201ENST00000479411 923 ntBASIC6.32□□□□□ -1.4
RFX1P22670 TTC39CP1-201ENST00000512513 755 ntBASIC6.32□□□□□ -1.4
RFX1P22670 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.32□□□□□ -1.4
RFX1P22670 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.32□□□□□ -1.4
RFX1P22670 NARSP2-201ENST00000518524 679 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AP003080.1-202ENST00000526526 915 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AL133271.1-201ENST00000538229 291 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC6.32□□□□□ -1.4
RFX1P22670 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.32□□□□□ -1.4
RFX1P22670 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC6.32□□□□□ -1.4
RFX1P22670 AC010547.6-201ENST00000571789 193 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC6.32□□□□□ -1.4
RFX1P22670 MIR4776-2-201ENST00000580204 80 ntBASIC6.32□□□□□ -1.4
RFX1P22670 MIR4424-201ENST00000585257 86 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.32□□□□□ -1.4
RFX1P22670 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.32□□□□□ -1.4
RFX1P22670 AC090948.1-201ENST00000607464 549 ntBASIC6.32□□□□□ -1.4
RFX1P22670 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RFX1P22670 AC040168.1-201ENST00000623594 991 ntBASIC6.32□□□□□ -1.4
RFX1P22670 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.32□□□□□ -1.4
RFX1P22670 AC000095.2-202ENST00000637415 154 ntBASIC6.32□□□□□ -1.4
RFX1P22670 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.32□□□□□ -1.4
RFX1P22670 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC6.32□□□□□ -1.4
RFX1P22670 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.32□□□□□ -1.4
RFX1P22670 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.32□□□□□ -1.4
RFX1P22670 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RFX1P22670 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.32□□□□□ -1.4
RFX1P22670 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
RFX1P22670 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RFX1P22670 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
RFX1P22670 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
RFX1P22670 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.31□□□□□ -1.4
RFX1P22670 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.31□□□□□ -1.4
RFX1P22670 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.31□□□□□ -1.4
RFX1P22670 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
RFX1P22670 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RFX1P22670 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RFX1P22670 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RFX1P22670 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.31□□□□□ -1.4
RFX1P22670 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.31□□□□□ -1.4
RFX1P22670 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RFX1P22670 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
RFX1P22670 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.31□□□□□ -1.4
RFX1P22670 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
RFX1P22670 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
RFX1P22670 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
RFX1P22670 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
RFX1P22670 RNA5SP514-201ENST00000363717 111 ntBASIC6.31□□□□□ -1.4
RFX1P22670 U3.12-201ENST00000364498 214 ntBASIC6.31□□□□□ -1.4
RFX1P22670 RNU5E-6P-201ENST00000365574 115 ntBASIC6.31□□□□□ -1.4
RFX1P22670 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
RFX1P22670 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
RFX1P22670 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.31□□□□□ -1.4
RFX1P22670 RNU6-641P-201ENST00000384006 107 ntBASIC6.31□□□□□ -1.4
RFX1P22670 MT-TC-201ENST00000387405 66 ntBASIC6.31□□□□□ -1.4
RFX1P22670 MIR1250-201ENST00000408098 113 ntBASIC6.31□□□□□ -1.4
RFX1P22670 CYCSP10-201ENST00000417973 294 ntBASIC6.31□□□□□ -1.4
RFX1P22670 ELOCP18-201ENST00000434209 337 ntBASIC6.31□□□□□ -1.4
RFX1P22670 SPRYD7P1-201ENST00000443861 570 ntBASIC6.31□□□□□ -1.4
RFX1P22670 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC6.31□□□□□ -1.4
RFX1P22670 PPIAP3-201ENST00000450588 505 ntBASIC6.31□□□□□ -1.4
RFX1P22670 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.31□□□□□ -1.4
RFX1P22670 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC6.31□□□□□ -1.4
RFX1P22670 AC004129.2-201ENST00000457229 287 ntBASIC6.31□□□□□ -1.4
RFX1P22670 SNORD97-201ENST00000459187 142 ntBASIC6.31□□□□□ -1.4
RFX1P22670 Y_RNA.632-201ENST00000459189 102 ntBASIC6.31□□□□□ -1.4
RFX1P22670 HMGB1P25-201ENST00000468402 607 ntBASIC6.31□□□□□ -1.4
RFX1P22670 RPL21P99-201ENST00000480369 423 ntBASIC6.31□□□□□ -1.4
RFX1P22670 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC6.31□□□□□ -1.4
RFX1P22670 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC6.31□□□□□ -1.4
RFX1P22670 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.31□□□□□ -1.4
RFX1P22670 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC6.31□□□□□ -1.4
RFX1P22670 HMGN1P28-201ENST00000521340 364 ntBASIC6.31□□□□□ -1.4
RFX1P22670 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC6.31□□□□□ -1.4
RFX1P22670 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.31□□□□□ -1.4
RFX1P22670 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.31□□□□□ -1.4
RFX1P22670 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
RFX1P22670 AC025857.2-201ENST00000602711 238 ntBASIC6.31□□□□□ -1.4
RFX1P22670 AL136228.1-201ENST00000622221 319 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms