Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC107016.1-201ENST00000550463 337 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC090695.1-201ENST00000561269 1222 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 MIR3160-1-201ENST00000577972 85 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 CCDC58P3-201ENST00000590792 430 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 RPL23AP92-201ENST00000603609 255 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC067959.1-201ENST00000604334 379 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AL451074.6-201ENST00000608512 729 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC009974.1-201ENST00000608881 455 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC107075.1-201ENST00000613695 314 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC091046.2-201ENST00000620775 665 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC068787.1-201ENST00000623908 691 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AL356121.2-201ENST00000624715 780 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 MIR1322-201ENST00000638013 71 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS28Q9UK41 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.21□□□□□ -1.73
VPS28Q9UK41 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.21□□□□□ -1.73
VPS28Q9UK41 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS28Q9UK41 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS28Q9UK41 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 SNORA31-201ENST00000362607 130 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 SNORD116.1-201ENST00000365628 92 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 RNU6-1122P-201ENST00000384449 107 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 U3.29-201ENST00000391296 212 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 RPL21P65-201ENST00000406094 466 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AL356967.1-201ENST00000406305 431 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC068533.2-201ENST00000411872 306 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC012065.2-201ENST00000421295 375 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC084290.1-201ENST00000434995 374 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 RPL23AP74-201ENST00000437246 471 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AL138799.3-201ENST00000438968 350 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 ELOCP13-201ENST00000443934 329 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 RAD23BP3-201ENST00000454157 1152 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 RPS15AP17-201ENST00000470598 390 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC006517.1-201ENST00000480485 328 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 ACTG1P13-201ENST00000486987 1043 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AL132838.2-201ENST00000492041 314 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 RPL29P14-201ENST00000495837 428 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 HMGB1P28-201ENST00000507778 552 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC093824.1-201ENST00000508796 343 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 AL049634.3-201ENST00000604968 457 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC069304.2-201ENST00000605154 435 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 HMGB1P50-201ENST00000605814 607 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 MIR7151-201ENST00000617477 60 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC069209.1-201ENST00000619282 651 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AC040168.1-201ENST00000623594 991 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 AL078595.3-201ENST00000623815 1166 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS28Q9UK41 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS28Q9UK41 RLIMP1-201ENST00000339626 1680 ntBASIC4.21□□□□□ -1.74
VPS28Q9UK41 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS28Q9UK41 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS28Q9UK41 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS28Q9UK41 SNORA60-201ENST00000362396 134 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 RNA5SP258-201ENST00000362750 119 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 HSPE1P12-201ENST00000412576 301 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 OR5BE1P-201ENST00000425977 939 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS28Q9UK41 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 RPS4XP4-201ENST00000443195 763 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 AL162151.2-201ENST00000448875 158 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 RNU2-58P-201ENST00000516403 183 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms