Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL121576.1-201ENST00000556055 276 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC074050.1-201ENST00000563247 211 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AL021368.1-201ENST00000607490 540 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AL159169.3-201ENST00000608871 561 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AL162574.2-201ENST00000614618 657 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AL355810.1-201ENST00000614629 552 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC010608.2-201ENST00000624830 470 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 CEP170P1-201ENST00000502249 4587 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC111188.2-201ENST00000529697 1387 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 ZNF826P-207ENST00000622273 1910 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 RNU6-932P-201ENST00000391108 106 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 OR8G2P-201ENST00000412796 908 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 RPL7AP73-201ENST00000413490 353 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC127526.1-201ENST00000417526 366 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 COX6B1P7-201ENST00000430845 235 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 MTND4P15-201ENST00000437913 1033 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 CDC27P1-201ENST00000445384 715 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC098824.1-201ENST00000453565 980 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC089999.1-201ENST00000460336 374 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC048346.1-201ENST00000510247 144 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 TRAV8-5-201ENST00000537369 341 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 CYP2C60P-201ENST00000566088 139 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 MIR5684-201ENST00000585074 65 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC022916.3-201ENST00000592961 742 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AL161729.3-201ENST00000603533 673 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AL365400.2-201ENST00000605604 902 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC055876.5-201ENST00000605667 259 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 MIR8084-201ENST00000614105 89 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC002076.2-201ENST00000617362 122 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AL139089.1-201ENST00000620372 975 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 AC006111.3-201ENST00000622137 383 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 RNA5SP196-201ENST00000625967 102 ntBASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
ZNF540Q8NDQ6 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
ZNF540Q8NDQ6 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
ZNF540Q8NDQ6 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.84
ZNF540Q8NDQ6 AL049780.3-201ENST00000624612 1583 ntBASIC3.59□□□□□ -1.84
ZNF540Q8NDQ6 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
ZNF540Q8NDQ6 ZNF807-201ENST00000328088 1707 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AL079305.1-201ENST00000623159 3008 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 SNORA60-201ENST00000362396 134 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 SNORD82-201ENST00000365530 70 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 RNU1-101P-201ENST00000391171 127 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 GSTA8P-201ENST00000404253 637 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 RNU6-1077P-201ENST00000410506 102 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 OR1AA1P-201ENST00000419597 916 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 RPL17P35-201ENST00000432217 549 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AL050341.1-201ENST00000447743 313 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AL359073.1-201ENST00000448036 403 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 RPL36AP33-201ENST00000450395 310 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 snoU109.4-201ENST00000458953 143 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AL049829.1-201ENST00000465411 156 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC078857.1-201ENST00000469870 667 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AL136126.1-201ENST00000473603 402 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC026402.1-201ENST00000513642 170 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 SNORA31.8-201ENST00000516327 108 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 OR8K2P-201ENST00000524645 927 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms