Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
SKA3Q8IX90 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 RNA5SP167-201ENST00000365461 116 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 MIR153-1-201ENST00000384914 90 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 GSTA8P-201ENST00000404253 637 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 RN7SKP159-201ENST00000410657 292 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 SNORA57.3-201ENST00000411095 141 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 BTF3P8-201ENST00000414577 526 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC027644.1-201ENST00000419595 298 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 TCEA1P2-201ENST00000420496 906 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 SFR1P2-201ENST00000421841 730 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 UBE2V1P1-201ENST00000430836 445 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 BX276092.4-201ENST00000452056 248 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 RPS20P32-201ENST00000456044 356 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 NF1P3-201ENST00000457709 450 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 HMGB3P30-201ENST00000457863 606 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AL133162.1-201ENST00000463228 453 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC022034.3-201ENST00000471393 478 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC118282.2-201ENST00000508739 374 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC109471.1-201ENST00000511631 612 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC016065.2-201ENST00000514530 444 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 MTCO1P30-201ENST00000515244 580 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC104417.1-201ENST00000523974 751 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 UBE2NP1-201ENST00000545592 458 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 BNIP3P5-201ENST00000562290 498 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AL845331.3-202ENST00000562856 261 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC022069.1-201ENST00000582910 658 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC090330.1-201ENST00000588646 764 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AL163642.2-201ENST00000604722 1019 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC105227.2-201ENST00000615075 605 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC099654.8-201ENST00000637757 681 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 AC025125.1-201ENST00000624743 1922 ntBASIC3.26□□□□□ -1.89
SKA3Q8IX90 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
SKA3Q8IX90 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SKA3Q8IX90 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SKA3Q8IX90 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SKA3Q8IX90 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AL133383.2-201ENST00000622958 2336 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SKA3Q8IX90 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SKA3Q8IX90 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SKA3Q8IX90 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 RNU1-64P-201ENST00000365443 163 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 U8.11-201ENST00000384699 133 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 U8.12-201ENST00000384701 133 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 RPL7P60-201ENST00000397636 735 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 AL356967.1-201ENST00000406305 431 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 RNU6-575P-201ENST00000411326 105 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 USP9YP21-201ENST00000420603 432 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
SKA3Q8IX90 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 NANOGP10-201ENST00000453325 895 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 U8.18-201ENST00000459285 133 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC087879.1-201ENST00000474343 374 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 RN7SKP83-201ENST00000516512 178 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 OR7E13P-201ENST00000526052 910 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 OR8I1P-201ENST00000529291 931 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AL121766.1-201ENST00000547436 487 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 MTCYBP28-201ENST00000566728 1132 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SKA3Q8IX90 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 RNU1-30P-201ENST00000606575 163 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 AL139022.2-201ENST00000606934 443 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC097504.2-201ENST00000608088 454 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 AC105429.2-201ENST00000610567 517 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms