Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 AC007424.1-203ENST00000554613 687 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 AC009313.2-201ENST00000417893 1941 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 RNA5SP383-201ENST00000362934 120 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 RWDD4P2-201ENST00000426392 563 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 HMGB1P18-201ENST00000438801 619 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 AC125238.1-201ENST00000448842 249 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 RWDD4P1-201ENST00000488019 565 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 SRIP1-201ENST00000489235 288 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 RPL21P3-201ENST00000395517 478 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AL513477.1-202ENST00000417061 214 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 ZYG11AP1-201ENST00000430329 837 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 FTH1P6-201ENST00000430768 320 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AL590639.1-201ENST00000456484 337 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AC146507.2-201ENST00000460608 476 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 IGKV2D-23-201ENST00000518179 286 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AC068657.1-201ENST00000520807 306 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AL109741.3-201ENST00000561748 592 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AC025754.2-201ENST00000606491 432 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 AL591516.1-201ENST00000611326 274 ntBASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC88AQ3V6T2 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 RAD1P1-201ENST00000231383 813 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC233981.1-201ENST00000423224 461 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 RPS6P12-201ENST00000432491 726 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AL357520.1-201ENST00000441557 453 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC009163.5-201ENST00000575421 637 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 DNAJC19P3-201ENST00000594491 331 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC096586.2-201ENST00000610260 441 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 RN7SKP44-201ENST00000363602 316 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 RNA5SP425-201ENST00000410336 112 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 RNA5SP508-201ENST00000411327 119 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC105402.1-201ENST00000413336 545 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC021146.5-201ENST00000503544 545 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 SNORD53-201ENST00000579969 78 ntBASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC88AQ3V6T2 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 RNU6-178P-201ENST00000384631 104 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 MIR887-201ENST00000401258 79 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 RN7SKP192-201ENST00000411291 327 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 AC245054.2-201ENST00000415639 319 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 MTCO1P51-201ENST00000427672 1060 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 RPS27P29-201ENST00000463110 252 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 RPL23AP14-201ENST00000468281 468 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 AC245166.1-201ENST00000521012 253 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 AP003122.3-201ENST00000526316 255 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 AC007954.1-201ENST00000554198 494 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 AC092628.2-201ENST00000622492 339 ntBASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC88AQ3V6T2 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 U3.6-201ENST00000363622 211 ntBASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 SNORA81-201ENST00000408493 178 ntBASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms