Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RPS4XP5-202ENST00000449995 1334 ntBASIC3.44□□□□□ -1.86
SHHQ15465 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.44□□□□□ -1.86
SHHQ15465 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SHHQ15465 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
SHHQ15465 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.43□□□□□ -1.86
SHHQ15465 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
SHHQ15465 SNORD6-201ENST00000365444 73 ntBASIC3.43□□□□□ -1.86
SHHQ15465 RNU6-31P-201ENST00000384388 108 ntBASIC3.43□□□□□ -1.86
SHHQ15465 RNU6-564P-201ENST00000410983 104 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AL512504.1-201ENST00000415494 778 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.43□□□□□ -1.86
SHHQ15465 AC006989.1-201ENST00000427212 131 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.43□□□□□ -1.86
SHHQ15465 AC073508.1-201ENST00000428866 656 ntBASIC3.43□□□□□ -1.86
SHHQ15465 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AL590762.3-201ENST00000436372 640 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AC105272.1-201ENST00000438604 198 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.43□□□□□ -1.86
SHHQ15465 AC023512.1-201ENST00000444513 499 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AC112492.1-201ENST00000449607 712 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AL513343.1-201ENST00000451818 792 ntBASIC3.43□□□□□ -1.86
SHHQ15465 NPM1P17-201ENST00000479221 602 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AC069499.1-201ENST00000489433 509 ntBASIC3.43□□□□□ -1.86
SHHQ15465 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.43□□□□□ -1.86
SHHQ15465 AC114781.4-201ENST00000513707 639 ntBASIC3.43□□□□□ -1.86
SHHQ15465 RNU6-491P-201ENST00000516099 110 ntBASIC3.43□□□□□ -1.86
SHHQ15465 RNU6-1004P-201ENST00000516584 111 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AC008489.1-201ENST00000524271 483 ntBASIC3.43□□□□□ -1.86
SHHQ15465 SNRPGP1-201ENST00000553864 222 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.43□□□□□ -1.86
SHHQ15465 ATP1B3P1-201ENST00000605365 821 ntBASIC3.43□□□□□ -1.86
SHHQ15465 BNIP3P7-201ENST00000605641 516 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.43□□□□□ -1.86
SHHQ15465 MIR7843-201ENST00000622274 79 ntBASIC3.43□□□□□ -1.86
SHHQ15465 AC090229.1-201ENST00000590983 1609 ntBASIC3.43□□□□□ -1.86
SHHQ15465 RNF6P1-201ENST00000444889 1784 ntBASIC3.43□□□□□ -1.86
SHHQ15465 MTCO1P14-201ENST00000441695 1559 ntBASIC3.42□□□□□ -1.86
SHHQ15465 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SHHQ15465 FAM35BP-202ENST00000497389 3337 ntBASIC3.42□□□□□ -1.86
SHHQ15465 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SHHQ15465 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
SHHQ15465 MIR7-1-201ENST00000384871 110 ntBASIC3.42□□□□□ -1.86
SHHQ15465 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SHHQ15465 DHFRP5-201ENST00000406944 564 ntBASIC3.42□□□□□ -1.86
SHHQ15465 PTP4A1P5-201ENST00000420305 455 ntBASIC3.42□□□□□ -1.86
SHHQ15465 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.42□□□□□ -1.86
SHHQ15465 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.42□□□□□ -1.86
SHHQ15465 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.42□□□□□ -1.86
SHHQ15465 NDUFA5P10-201ENST00000432147 357 ntBASIC3.42□□□□□ -1.86
SHHQ15465 AL357552.1-201ENST00000445254 415 ntBASIC3.42□□□□□ -1.86
SHHQ15465 YWHAQP9-201ENST00000445891 512 ntBASIC3.42□□□□□ -1.86
SHHQ15465 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.42□□□□□ -1.86
SHHQ15465 AL627224.1-201ENST00000448334 444 ntBASIC3.42□□□□□ -1.86
SHHQ15465 HMGB1P26-201ENST00000452520 628 ntBASIC3.42□□□□□ -1.86
SHHQ15465 TPRKBP1-201ENST00000456243 481 ntBASIC3.42□□□□□ -1.86
SHHQ15465 AC087312.1-201ENST00000471411 480 ntBASIC3.42□□□□□ -1.86
SHHQ15465 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.42□□□□□ -1.86
SHHQ15465 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
SHHQ15465 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.42□□□□□ -1.86
SHHQ15465 NDUFB4P9-201ENST00000511646 388 ntBASIC3.42□□□□□ -1.86
SHHQ15465 RNU6-1308P-201ENST00000516817 103 ntBASIC3.42□□□□□ -1.86
SHHQ15465 OR4V1P-201ENST00000525394 1140 ntBASIC3.42□□□□□ -1.86
SHHQ15465 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.42□□□□□ -1.86
SHHQ15465 AL139174.1-201ENST00000531489 886 ntBASIC3.42□□□□□ -1.86
SHHQ15465 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.42□□□□□ -1.86
SHHQ15465 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.42□□□□□ -1.86
SHHQ15465 PRELID3BP8-201ENST00000604148 295 ntBASIC3.42□□□□□ -1.86
SHHQ15465 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 MIR7973-1-201ENST00000614683 76 ntBASIC3.42□□□□□ -1.86
SHHQ15465 AL136964.1-201ENST00000622038 2990 ntBASIC3.42□□□□□ -1.86
SHHQ15465 AC116563.2-201ENST00000624751 535 ntBASIC3.42□□□□□ -1.86
SHHQ15465 MIR622-201ENST00000638396 96 ntBASIC3.42□□□□□ -1.86
SHHQ15465 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SHHQ15465 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
SHHQ15465 AL645568.2-201ENST00000432815 1337 ntBASIC3.42□□□□□ -1.86
SHHQ15465 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SHHQ15465 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SHHQ15465 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SHHQ15465 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SHHQ15465 OR1S2-201ENST00000302592 978 ntBASIC3.41□□□□□ -1.86
SHHQ15465 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SHHQ15465 SNORA40.4-201ENST00000390971 128 ntBASIC3.41□□□□□ -1.86
SHHQ15465 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.41□□□□□ -1.86
SHHQ15465 MTND4P11-201ENST00000417020 1058 ntBASIC3.41□□□□□ -1.86
SHHQ15465 RPS24P8-201ENST00000431490 402 ntBASIC3.41□□□□□ -1.86
SHHQ15465 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.41□□□□□ -1.86
SHHQ15465 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.41□□□□□ -1.86
SHHQ15465 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.41□□□□□ -1.86
SHHQ15465 AC008264.1-201ENST00000447612 367 ntBASIC3.41□□□□□ -1.86
SHHQ15465 AL500527.1-201ENST00000448532 255 ntBASIC3.41□□□□□ -1.86
SHHQ15465 FDX1P2-201ENST00000450769 375 ntBASIC3.41□□□□□ -1.86
SHHQ15465 RPL7P47-201ENST00000497299 556 ntBASIC3.41□□□□□ -1.86
SHHQ15465 AC023050.1-201ENST00000498198 304 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms