Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC245517.5-201ENST00000611529 162 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.22□□□□□ -1.57
RNF4P78317 AC079684.1-201ENST00000621405 437 ntBASIC5.22□□□□□ -1.57
RNF4P78317 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
RNF4P78317 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
RNF4P78317 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
RNF4P78317 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
RNF4P78317 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
RNF4P78317 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 AC097461.1-201ENST00000568928 2821 ntBASIC5.22□□□□□ -1.57
RNF4P78317 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 BCORP1-203ENST00000513194 5093 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC235565.1-201ENST00000456962 1325 ntBASIC5.22□□□□□ -1.57
RNF4P78317 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
RNF4P78317 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.21□□□□□ -1.57
RNF4P78317 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.21□□□□□ -1.57
RNF4P78317 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
RNF4P78317 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.57
RNF4P78317 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.21□□□□□ -1.58
RNF4P78317 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 AL118496.1-201ENST00000440201 1812 ntBASIC5.21□□□□□ -1.58
RNF4P78317 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 BTBD10P1-201ENST00000549824 1352 ntBASIC5.21□□□□□ -1.58
RNF4P78317 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 SNORA62.1-201ENST00000364287 154 ntBASIC5.21□□□□□ -1.58
RNF4P78317 RNU6-831P-201ENST00000384548 107 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AL049697.2-201ENST00000403708 294 ntBASIC5.21□□□□□ -1.58
RNF4P78317 RNU2-21P-201ENST00000410368 188 ntBASIC5.21□□□□□ -1.58
RNF4P78317 RNU6-193P-201ENST00000410977 107 ntBASIC5.21□□□□□ -1.58
RNF4P78317 RPS7P15-201ENST00000415804 584 ntBASIC5.21□□□□□ -1.58
RNF4P78317 RNF10P1-201ENST00000418589 369 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AC236972.2-201ENST00000434979 310 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.21□□□□□ -1.58
RNF4P78317 AC127537.2-201ENST00000439258 465 ntBASIC5.21□□□□□ -1.58
RNF4P78317 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 RPL21P89-201ENST00000444021 467 ntBASIC5.21□□□□□ -1.58
RNF4P78317 NOP56P2-201ENST00000447491 769 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AL450023.1-201ENST00000450868 751 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.21□□□□□ -1.58
RNF4P78317 SNORD19B-201ENST00000459623 84 ntBASIC5.21□□□□□ -1.58
RNF4P78317 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC5.21□□□□□ -1.58
RNF4P78317 AL136038.1-201ENST00000497246 351 ntBASIC5.21□□□□□ -1.58
RNF4P78317 RN7SL466P-201ENST00000497546 295 ntBASIC5.21□□□□□ -1.58
RNF4P78317 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 AC016559.2-201ENST00000510759 359 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 OR5BN1P-201ENST00000532955 829 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AC137627.1-201ENST00000545761 289 ntBASIC5.21□□□□□ -1.58
RNF4P78317 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.21□□□□□ -1.58
RNF4P78317 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.21□□□□□ -1.58
RNF4P78317 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.21□□□□□ -1.58
RNF4P78317 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC5.21□□□□□ -1.58
RNF4P78317 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.21□□□□□ -1.58
RNF4P78317 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.21□□□□□ -1.58
RNF4P78317 AC093249.1-201ENST00000567049 203 ntBASIC5.21□□□□□ -1.58
RNF4P78317 MIR1273E-201ENST00000581165 102 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.21□□□□□ -1.58
RNF4P78317 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.21□□□□□ -1.58
RNF4P78317 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 AL512782.1-201ENST00000603093 364 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AC008638.3-201ENST00000603341 463 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AC004853.1-201ENST00000604902 698 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AL133215.3-201ENST00000609801 448 ntBASIC5.21□□□□□ -1.58
RNF4P78317 MIR6862-1-201ENST00000613016 70 ntBASIC5.21□□□□□ -1.58
RNF4P78317 MIR6862-2-201ENST00000614755 70 ntBASIC5.21□□□□□ -1.58
RNF4P78317 AL133216.2-202ENST00000634512 349 ntBASIC5.21□□□□□ -1.58
RNF4P78317 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
RNF4P78317 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
RNF4P78317 AL031595.2-201ENST00000624215 19071 ntBASIC5.21□□□□□ -1.58
RNF4P78317 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
RNF4P78317 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
RNF4P78317 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.21□□□□□ -1.58
RNF4P78317 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
RNF4P78317 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.2□□□□□ -1.58
RNF4P78317 LINC01963-201ENST00000562038 3148 ntBASIC5.2□□□□□ -1.58
RNF4P78317 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 RNU1-130P-201ENST00000363930 160 ntBASIC5.2□□□□□ -1.58
RNF4P78317 Y_RNA.259-201ENST00000364619 101 ntBASIC5.2□□□□□ -1.58
RNF4P78317 MIR514A2-201ENST00000385131 88 ntBASIC5.2□□□□□ -1.58
RNF4P78317 MIR514A3-201ENST00000385132 88 ntBASIC5.2□□□□□ -1.58
RNF4P78317 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
RNF4P78317 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
RNF4P78317 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.2□□□□□ -1.58
RNF4P78317 RNU2-15P-201ENST00000410692 191 ntBASIC5.2□□□□□ -1.58
RNF4P78317 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms