Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MTCYBP12-201ENST00000440559 1134 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
FOXA3P55318 AL157827.1-201ENST00000447622 132 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA3P55318 RPL37P3-201ENST00000456825 293 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 RPS27AP9-201ENST00000477681 438 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 RN7SL20P-201ENST00000488827 297 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.29□□□□□ -2.04
FOXA3P55318 HSPD1P15-201ENST00000505573 1122 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AC104619.4-201ENST00000510773 249 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.29□□□□□ -2.04
FOXA3P55318 RNU6-1004P-201ENST00000516584 111 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.29□□□□□ -2.04
FOXA3P55318 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
FOXA3P55318 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.29□□□□□ -2.04
FOXA3P55318 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC2.29□□□□□ -2.04
FOXA3P55318 HIGD1AP1-201ENST00000550979 275 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA3P55318 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC2.29□□□□□ -2.04
FOXA3P55318 MIR4443-201ENST00000585052 53 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AF230666.2-201ENST00000602328 725 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AL590392.1-201ENST00000604960 446 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AC068831.7-201ENST00000616954 363 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AP000676.4-201ENST00000624659 623 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
FOXA3P55318 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA3P55318 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
FOXA3P55318 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.04
FOXA3P55318 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA3P55318 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
FOXA3P55318 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA3P55318 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA3P55318 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA3P55318 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
FOXA3P55318 RPL21P17-201ENST00000397467 475 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 RNU2-21P-201ENST00000410368 188 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC2.28□□□□□ -2.04
FOXA3P55318 OR1AA1P-201ENST00000419597 916 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 AC007064.3-201ENST00000422608 359 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 AC233728.2-201ENST00000425348 757 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA3P55318 C4BPAP2-201ENST00000428434 478 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA3P55318 AC108734.1-201ENST00000439549 399 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 RPL39P40-201ENST00000445481 146 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 RSL24D1P2-201ENST00000445584 366 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA3P55318 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
FOXA3P55318 RPL31P20-201ENST00000449593 360 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA3P55318 OR6K1P-201ENST00000456766 971 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.28□□□□□ -2.04
FOXA3P55318 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA3P55318 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.28□□□□□ -2.04
FOXA3P55318 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.28□□□□□ -2.04
FOXA3P55318 NPM1P41-201ENST00000512920 831 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA3P55318 GMPSP1-201ENST00000514075 579 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA3P55318 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.28□□□□□ -2.04
FOXA3P55318 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA3P55318 AC074029.1-201ENST00000552531 1044 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 AC034105.3-201ENST00000565294 442 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA3P55318 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA3P55318 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC2.28□□□□□ -2.04
FOXA3P55318 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.28□□□□□ -2.04
FOXA3P55318 AC090115.4-201ENST00000609970 188 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 AC100793.4-201ENST00000613683 429 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 AC004696.1-201ENST00000614345 607 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA3P55318 AC010338.1-201ENST00000621823 717 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC2.28□□□□□ -2.04
FOXA3P55318 DPY19L2P2-203ENST00000435536 1858 ntBASIC2.28□□□□□ -2.04
FOXA3P55318 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA3P55318 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA3P55318 AC022031.1-201ENST00000585985 2593 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA3P55318 ASNSP3-201ENST00000451989 1306 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA3P55318 CGA-201ENST00000369582 729 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA3P55318 RNU6-185P-201ENST00000384421 107 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AL591034.1-201ENST00000407447 340 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 RNU2-6P-201ENST00000411404 190 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 TOMM22P1-201ENST00000418578 312 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 BX842559.1-201ENST00000419615 532 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC2.27□□□□□ -2.05
FOXA3P55318 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 OR51AB1P-201ENST00000429046 620 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 SAR1AP4-201ENST00000429225 591 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA3P55318 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA3P55318 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA3P55318 AC092641.1-201ENST00000440229 772 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 RPL23AP20-201ENST00000447965 421 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA3P55318 AC104472.2-201ENST00000469035 601 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 MTND3P6-201ENST00000485242 339 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AL024509.2-201ENST00000493462 493 ntBASIC2.27□□□□□ -2.05
FOXA3P55318 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms