Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.73□□□□□ -1.81
PTPN4P29074 AP002001.2-201ENST00000529025 1469 ntBASIC3.73□□□□□ -1.81
PTPN4P29074 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
PTPN4P29074 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
PTPN4P29074 SNORA71.3-201ENST00000362582 128 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 RNA5SP124-201ENST00000362739 110 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PTPN4P29074 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.72□□□□□ -1.81
PTPN4P29074 SSXP10-201ENST00000402595 565 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 RAB9AP3-201ENST00000412737 573 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 LIPT1P1-201ENST00000415870 1186 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 RPS3AP9-201ENST00000417027 792 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 Z97055.1-201ENST00000419730 712 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 AC233981.1-201ENST00000423224 461 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 FO393414.1-201ENST00000428697 1184 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 RPS7P2-201ENST00000435134 607 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 YWHAZP8-201ENST00000436935 731 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 RAB9AP1-201ENST00000449393 573 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 snoU13.22-201ENST00000459428 104 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.72□□□□□ -1.81
PTPN4P29074 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PTPN4P29074 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.72□□□□□ -1.81
PTPN4P29074 NDUFA5P2-201ENST00000519723 344 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 NDUFB9P3-201ENST00000521269 501 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.72□□□□□ -1.81
PTPN4P29074 AC004217.3-201ENST00000551552 878 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.72□□□□□ -1.81
PTPN4P29074 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.72□□□□□ -1.81
PTPN4P29074 AC008687.2-201ENST00000597865 520 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 BNIP3P31-201ENST00000604515 566 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 HMGN2P28-201ENST00000606102 262 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 SNORA51-201ENST00000606420 132 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 VN1R74P-201ENST00000613259 503 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 AL138955.1-201ENST00000622881 1040 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 AC109454.4-201ENST00000623411 649 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PTPN4P29074 AL356118.1-201ENST00000635272 1078 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 MIR7153-201ENST00000637758 57 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 AP004289.2-201ENST00000444413 1457 ntBASIC3.72□□□□□ -1.81
PTPN4P29074 AC073073.2-201ENST00000609827 2578 ntBASIC3.71□□□□□ -1.81
PTPN4P29074 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.71□□□□□ -1.82
PTPN4P29074 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
PTPN4P29074 PWAR6-201ENST00000552334 4618 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 RNU6-236P-201ENST00000363886 106 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 RNU6-335P-201ENST00000364563 113 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 SFR1P1-201ENST00000403720 688 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 ZNF602P-201ENST00000405929 924 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC069282.1-201ENST00000411911 526 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC069157.1-201ENST00000421749 137 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC013262.1-201ENST00000426710 252 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 HIGD1AP12-201ENST00000427832 281 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.71□□□□□ -1.82
PTPN4P29074 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.71□□□□□ -1.82
PTPN4P29074 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.71□□□□□ -1.82
PTPN4P29074 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.71□□□□□ -1.82
PTPN4P29074 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 RPS26P30-201ENST00000443431 335 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 AL136097.1-201ENST00000456945 913 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 NF1P3-201ENST00000457709 450 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 RPL21P11-201ENST00000461458 483 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 SNRPGP3-201ENST00000469405 227 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 RPL21P18-201ENST00000469899 480 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.71□□□□□ -1.82
PTPN4P29074 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.71□□□□□ -1.82
PTPN4P29074 AC093853.1-201ENST00000515689 483 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 RNU6-416P-201ENST00000516265 103 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 AC006518.2-201ENST00000542513 940 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 YPEL5P3-201ENST00000547227 352 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 TGIF1P1-201ENST00000558095 802 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.71□□□□□ -1.82
PTPN4P29074 MIR3944-201ENST00000581277 108 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 OR4G1P-201ENST00000588632 938 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC011492.1-201ENST00000600023 315 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC002487.1-201ENST00000604565 994 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC013468.1-201ENST00000608680 598 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC090425.2-201ENST00000608818 501 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AC005344.1-201ENST00000613391 459 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PTPN4P29074 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PTPN4P29074 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
PTPN4P29074 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PTPN4P29074 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.71□□□□□ -1.82
PTPN4P29074 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
PTPN4P29074 AC058791.1-201ENST00000608412 3198 ntBASIC3.71□□□□□ -1.82
PTPN4P29074 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PTPN4P29074 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PTPN4P29074 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTPN4P29074 RNU6-1181P-201ENST00000384191 106 ntBASIC3.7□□□□□ -1.82
PTPN4P29074 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.7□□□□□ -1.82
PTPN4P29074 AL136116.1-201ENST00000403591 381 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms