Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC009951.1-201ENST00000623674 2614 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SMARCA1P28370 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 MTCO1P14-201ENST00000441695 1559 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
SMARCA1P28370 OR4A15-201ENST00000314706 1035 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 RNU1-132P-201ENST00000364300 164 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 OR5H15-201ENST00000383696 930 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 RNA5SP372-201ENST00000390836 115 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AL121834.1-202ENST00000404494 277 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 RNU2-28P-201ENST00000410457 189 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC009237.10-201ENST00000414112 510 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.01□□□□□ -1.61
SMARCA1P28370 MTCO2P34-201ENST00000421994 607 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 RBMY1KP-201ENST00000423480 476 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC5.01□□□□□ -1.61
SMARCA1P28370 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.01□□□□□ -1.61
SMARCA1P28370 RPL23AP52-201ENST00000439311 478 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.01□□□□□ -1.61
SMARCA1P28370 RPL7P31-201ENST00000450192 724 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 RPS23P7-201ENST00000466210 444 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AP000893.1-201ENST00000474462 794 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC022880.1-201ENST00000534017 973 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC5.01□□□□□ -1.61
SMARCA1P28370 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 AL109766.1-201ENST00000555080 552 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC074051.3-201ENST00000570238 358 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 MIR3138-201ENST00000585238 82 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC022146.1-201ENST00000595307 847 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.01□□□□□ -1.61
SMARCA1P28370 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC068790.6-201ENST00000602558 258 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC004987.4-201ENST00000603383 338 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC128687.1-201ENST00000605304 619 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC091979.2-201ENST00000607514 214 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC239868.4-201ENST00000608318 671 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AK6-205ENST00000618980 483 ntTSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC007546.1-201ENST00000619452 559 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC019278.1-201ENST00000623516 479 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 AC067931.1-201ENST00000624190 671 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.01□□□□□ -1.61
SMARCA1P28370 AL672167.1-203ENST00000641299 2975 ntBASIC5.01□□□□□ -1.61
SMARCA1P28370 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.01□□□□□ -1.61
SMARCA1P28370 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SMARCA1P28370 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.01□□□□□ -1.61
SMARCA1P28370 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.01□□□□□ -1.61
SMARCA1P28370 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SMARCA1P28370 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5□□□□□ -1.61
SMARCA1P28370 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SMARCA1P28370 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
SMARCA1P28370 AC139713.2-215ENST00000641428 5037 ntBASIC5□□□□□ -1.61
SMARCA1P28370 DSTNP4-201ENST00000399472 474 ntBASIC5□□□□□ -1.61
SMARCA1P28370 Y_RNA.599-201ENST00000410489 109 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5□□□□□ -1.61
SMARCA1P28370 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5□□□□□ -1.61
SMARCA1P28370 AL953862.1-201ENST00000423016 168 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AC073335.1-201ENST00000427776 363 ntBASIC5□□□□□ -1.61
SMARCA1P28370 RPL36P19-201ENST00000430744 301 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC5□□□□□ -1.61
SMARCA1P28370 BMS1P19-201ENST00000433925 393 ntBASIC5□□□□□ -1.61
SMARCA1P28370 ELOCP30-201ENST00000447108 299 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5□□□□□ -1.61
SMARCA1P28370 TPT1P12-201ENST00000448968 492 ntBASIC5□□□□□ -1.61
SMARCA1P28370 ABCF2P2-201ENST00000450549 296 ntBASIC5□□□□□ -1.61
SMARCA1P28370 USP9YP10-201ENST00000454868 628 ntBASIC5□□□□□ -1.61
SMARCA1P28370 RNU6-956P-201ENST00000458868 103 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AC116337.2-201ENST00000477662 156 ntBASIC5□□□□□ -1.61
SMARCA1P28370 RPS4XP15-201ENST00000489210 795 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5□□□□□ -1.61
SMARCA1P28370 AC006499.5-201ENST00000505037 514 ntBASIC5□□□□□ -1.61
SMARCA1P28370 USP9YP5-201ENST00000511770 630 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5□□□□□ -1.61
SMARCA1P28370 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
SMARCA1P28370 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5□□□□□ -1.61
SMARCA1P28370 PHBP17-201ENST00000528576 541 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AC087276.1-201ENST00000529659 480 ntBASIC5□□□□□ -1.61
SMARCA1P28370 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5□□□□□ -1.61
SMARCA1P28370 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5□□□□□ -1.61
SMARCA1P28370 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5□□□□□ -1.61
SMARCA1P28370 OR6C7P-201ENST00000547875 934 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AL391156.1-201ENST00000554965 554 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms