Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC073587.1-201ENST00000447093 876 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 RPL7P59-201ENST00000447700 943 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.78□□□□□ -1.8
LMX1BO60663 AL359073.1-201ENST00000448036 403 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.78□□□□□ -1.8
LMX1BO60663 RPL36AP33-201ENST00000450395 310 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC3.78□□□□□ -1.8
LMX1BO60663 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.78□□□□□ -1.8
LMX1BO60663 RPL7P19-201ENST00000469948 618 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC072039.1-201ENST00000477611 581 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC105137.1-201ENST00000484355 562 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.78□□□□□ -1.8
LMX1BO60663 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 PARP4P3-201ENST00000510265 317 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 RPL7L1P13-201ENST00000511702 739 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 AF186190.1-201ENST00000517470 480 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 IFITM8P-201ENST00000522529 394 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.78□□□□□ -1.8
LMX1BO60663 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.78□□□□□ -1.8
LMX1BO60663 AP000827.1-201ENST00000527814 258 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 PHBP17-201ENST00000528576 541 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 OR5BC1P-201ENST00000529327 739 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC105233.3-201ENST00000531125 744 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 GTF2IP22-201ENST00000554443 182 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC106785.1-201ENST00000565935 262 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 CYP4A43P-201ENST00000568156 121 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.78□□□□□ -1.8
LMX1BO60663 AC020914.6-201ENST00000594327 272 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC233280.2-201ENST00000603917 1070 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AL390816.3-201ENST00000604527 1066 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AL354984.3-201ENST00000604803 325 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC068944.2-201ENST00000610373 403 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC092794.1-201ENST00000612734 582 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
LMX1BO60663 uc_338.9-201ENST00000617424 182 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AL445567.2-201ENST00000618935 498 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC007546.1-201ENST00000619452 559 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LMX1BO60663 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.78□□□□□ -1.8
LMX1BO60663 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.78□□□□□ -1.8
LMX1BO60663 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.78□□□□□ -1.8
LMX1BO60663 AC093535.2-201ENST00000624769 2326 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.81
LMX1BO60663 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC096656.1-201ENST00000623826 1364 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
LMX1BO60663 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.77□□□□□ -1.81
LMX1BO60663 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
LMX1BO60663 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
LMX1BO60663 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.77□□□□□ -1.81
LMX1BO60663 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
LMX1BO60663 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 RNU6-433P-201ENST00000363216 104 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 RNU6-374P-201ENST00000364146 108 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 RNU6-660P-201ENST00000364566 109 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 RNU6-317P-201ENST00000384031 107 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 MIR134-201ENST00000385258 73 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AL139098.1-201ENST00000407291 389 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.77□□□□□ -1.81
LMX1BO60663 RPL23AP39-201ENST00000415533 405 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.77□□□□□ -1.81
LMX1BO60663 BOLA3P4-201ENST00000418151 400 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 RPL7P4-203ENST00000430239 730 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.77□□□□□ -1.81
LMX1BO60663 TPTE2P6-202ENST00000445572 1007 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 PHBP16-201ENST00000446318 950 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3.77□□□□□ -1.81
LMX1BO60663 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.77□□□□□ -1.81
LMX1BO60663 RPL30P9-201ENST00000465586 330 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 UQCRHP4-201ENST00000471686 272 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC116337.2-201ENST00000477662 156 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC096751.1-202ENST00000502691 1067 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC006499.5-201ENST00000505037 514 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 MTND2P33-201ENST00000506452 1031 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC011352.1-201ENST00000512300 793 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.77□□□□□ -1.81
LMX1BO60663 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.77□□□□□ -1.81
LMX1BO60663 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.77□□□□□ -1.81
LMX1BO60663 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.77□□□□□ -1.81
LMX1BO60663 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.77□□□□□ -1.81
LMX1BO60663 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 CYCSP29-201ENST00000533731 318 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.77□□□□□ -1.81
LMX1BO60663 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.77□□□□□ -1.81
LMX1BO60663 AL352979.3-201ENST00000553515 247 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.77□□□□□ -1.81
LMX1BO60663 AC124068.1-201ENST00000563131 678 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms