Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AL161756.3-201ENST00000641216 2071 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 U3.13-201ENST00000364804 214 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 SNORA70.3-201ENST00000365075 132 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 MIR27A-201ENST00000385073 78 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 RNA5SP176-201ENST00000390956 110 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 RN7SL390P-201ENST00000470634 284 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 RN7SL868P-201ENST00000485915 303 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 UBA52P7-201ENST00000486088 380 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 RPL30P1-201ENST00000488676 339 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AC022133.1-201ENST00000490961 571 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 RN7SL143P-201ENST00000496780 297 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AC073581.1-201ENST00000519036 575 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AC100870.1-201ENST00000522035 505 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 MIR4428-201ENST00000584884 73 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AL022394.1-201ENST00000606979 292 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 MRPL57P3-201ENST00000619218 176 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AC103564.3-201ENST00000621194 220 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AC097372.5-201ENST00000623665 376 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 AC078880.4-201ENST00000617627 1749 ntBASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
VPS9D1Q9Y2B5 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.71□□□□□ -1.33
VPS9D1Q9Y2B5 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 RNU4-44P-201ENST00000363050 141 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 Y_RNA.435-201ENST00000384095 112 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC096921.1-201ENST00000411661 375 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 TMEM167AP1-201ENST00000423409 219 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 IGKV1OR9-2-201ENST00000431378 277 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL591043.1-201ENST00000432461 424 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 MTCO1P5-201ENST00000433573 344 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 RPL30P10-201ENST00000488148 337 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC093767.1-201ENST00000504523 156 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 IGKV1OR2-1-201ENST00000514060 354 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC069113.1-201ENST00000517763 267 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC090241.1-201ENST00000587732 621 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 IGKV1OR2-118-201ENST00000603238 347 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL670379.6-201ENST00000603753 252 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL670379.1-201ENST00000604752 252 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL590032.1-201ENST00000604920 252 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL670379.5-201ENST00000605253 252 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL670379.8-201ENST00000605353 252 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL670379.7-201ENST00000605823 252 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 Y_RNA.772-201ENST00000606692 102 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL590099.1-201ENST00000615276 138 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AP001784.1-201ENST00000624107 428 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 U6.92-201ENST00000636464 89 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AC245100.2-201ENST00000454544 1679 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 AL033543.1-201ENST00000623440 13454 ntBASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
VPS9D1Q9Y2B5 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
VPS9D1Q9Y2B5 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.7□□□□□ -1.34
VPS9D1Q9Y2B5 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
VPS9D1Q9Y2B5 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms