Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC078918.1-201ENST00000498515 228 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC026784.1-201ENST00000507986 352 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 RNU5A-7P-201ENST00000515979 116 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 TRMT10BP1-201ENST00000519377 943 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC099489.2-201ENST00000574976 260 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC020914.6-201ENST00000594327 272 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC068880.4-201ENST00000623082 495 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 CR392039.5-201ENST00000623201 510 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AL732618.1-201ENST00000623251 301 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC012442.3-202ENST00000636742 206 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 AL359893.1-201ENST00000447628 1580 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 SNORA63.3-201ENST00000362682 132 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 SNORA5A-201ENST00000384111 134 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 RNU6-441P-201ENST00000384545 106 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 SFR1P1-201ENST00000403720 688 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 MIR1250-201ENST00000408098 113 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 MTCYBP24-201ENST00000420387 1106 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 AC009237.2-201ENST00000421358 284 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 AC233981.1-201ENST00000423224 461 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 UBE2V1P6-201ENST00000430840 422 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 ARL4AP4-201ENST00000434170 518 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 MTCYBP31-201ENST00000438855 1122 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 AC000041.1-201ENST00000439655 175 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 AL645931.1-201ENST00000439737 410 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 SEPT14P24-201ENST00000447236 180 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 NF1P3-201ENST00000457709 450 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 SNORD105B-201ENST00000458770 79 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 AC119751.1-201ENST00000513357 765 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 RN7SKP18-201ENST00000516005 275 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 RN7SKP83-201ENST00000516512 178 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 CR383656.14-201ENST00000551951 406 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 TRAV15-201ENST00000556680 249 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 KLKP1-201ENST00000595979 403 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 AL450489.1-201ENST00000612071 468 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 BX649567.1-201ENST00000642071 1134 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 SEPT7P7-201ENST00000420492 1301 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 MTND5P31-201ENST00000419366 1374 ntBASIC3.61□□□□□ -1.83
VPS35Q96QK1 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS35Q96QK1 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
VPS35Q96QK1 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS35Q96QK1 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS35Q96QK1 RNU6-619P-201ENST00000365146 108 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 PTMAP2-201ENST00000397627 327 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 LIPT1P1-201ENST00000415870 1186 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 SYF2P2-201ENST00000417620 583 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC096632.1-201ENST00000427395 310 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC114973.1-201ENST00000429057 632 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 MOB1AP1-201ENST00000430903 535 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AL138799.3-201ENST00000438968 350 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC044797.1-201ENST00000445744 679 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms