Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC026784.1-201ENST00000507986 352 ntBASIC3.71□□□□□ -1.82
TNFRSF4P43489 TMEM248P1-201ENST00000510579 951 ntBASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC008837.1-201ENST00000511513 412 ntBASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
TNFRSF4P43489 AL031985.2-201ENST00000600955 480 ntBASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC233280.2-201ENST00000603917 1070 ntBASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 AC004943.3-201ENST00000624116 600 ntBASIC3.71□□□□□ -1.82
TNFRSF4P43489 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
TNFRSF4P43489 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TNFRSF4P43489 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TNFRSF4P43489 RNA5SP52-201ENST00000362448 134 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 RNA5SP267-201ENST00000364893 126 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 RNU6-1226P-201ENST00000384317 107 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AL139098.1-201ENST00000407291 389 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 RNU6-575P-201ENST00000411326 105 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 BTF3P8-201ENST00000414577 526 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AL158156.1-201ENST00000422509 473 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC092634.2-201ENST00000428146 1010 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC087650.1-201ENST00000431445 468 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 USP9YP7-201ENST00000436723 430 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 USP9YP32-201ENST00000452432 430 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 NDUFA5P7-201ENST00000452914 242 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 GAPDHP39-201ENST00000481866 979 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC069306.1-201ENST00000507006 843 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 RNA5SP135-201ENST00000517019 125 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 MIR5195-201ENST00000583555 115 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AP003392.5-201ENST00000607857 415 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC091953.5-201ENST00000622919 233 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC109454.4-201ENST00000623411 649 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 AC004808.1-201ENST00000627671 721 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
TNFRSF4P43489 DBF4P1-201ENST00000412976 1892 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
TNFRSF4P43489 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
TNFRSF4P43489 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
TNFRSF4P43489 AL355578.1-201ENST00000607405 1328 ntBASIC3.7□□□□□ -1.82
TNFRSF4P43489 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
TNFRSF4P43489 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
TNFRSF4P43489 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
TNFRSF4P43489 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 RNU6-115P-201ENST00000364310 107 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC005517.2-201ENST00000424673 553 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 IFNNP1-201ENST00000429219 553 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TNFRSF4P43489 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 HMGB3P30-201ENST00000457863 606 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC026427.2-201ENST00000506228 536 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC023632.1-201ENST00000518463 375 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC007458.1-201ENST00000542812 373 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC008011.1-201ENST00000545989 227 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 YWHAZP1-201ENST00000556286 722 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC044913.1-201ENST00000557200 430 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 MIR4666A-201ENST00000580160 79 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 OR4G1P-201ENST00000588632 938 ntBASIC3.69□□□□□ -1.82
TNFRSF4P43489 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.69□□□□□ -1.82
TNFRSF4P43489 Z82195.1-201ENST00000604558 398 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 156.7 ms