Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC096921.2-201ENST00000561507 1916 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC5.51□□□□□ -1.53
COL8A1P27658 AP000866.6-201ENST00000638898 3579 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 Y_RNA.54-201ENST00000362766 105 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 RNA5SP132-201ENST00000364725 118 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 SNORD115-7-201ENST00000365306 82 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 SNORA51.11-201ENST00000384442 131 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 MIR320B1-201ENST00000390209 79 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.51□□□□□ -1.53
COL8A1P27658 RPL21P38-201ENST00000418090 167 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 RPL36P18-201ENST00000419316 318 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 AL035660.1-201ENST00000422041 222 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 AC091390.2-201ENST00000432573 374 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 MRPS18BP2-201ENST00000434310 759 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 RPL23AP74-201ENST00000437246 471 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 RPL29P29-201ENST00000448725 423 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AL034399.1-201ENST00000451535 380 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 RPL23AP71-201ENST00000470966 469 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AC026826.1-201ENST00000493002 361 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AC022206.1-201ENST00000495947 347 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AC231760.1-201ENST00000498002 260 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 RPS27AP18-201ENST00000515536 459 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 COX6B1P6-201ENST00000522347 255 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC5.51□□□□□ -1.53
COL8A1P27658 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.51□□□□□ -1.53
COL8A1P27658 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.51□□□□□ -1.53
COL8A1P27658 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.51□□□□□ -1.53
COL8A1P27658 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC5.51□□□□□ -1.53
COL8A1P27658 AC111186.1-201ENST00000604684 130 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AC145423.1-201ENST00000605712 336 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AC064801.1-201ENST00000612025 407 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.51□□□□□ -1.53
COL8A1P27658 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 AC074029.4-201ENST00000624796 1859 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
COL8A1P27658 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 AC011369.2-201ENST00000624423 1567 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC5.5□□□□□ -1.53
COL8A1P27658 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
COL8A1P27658 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 AC007342.5-201ENST00000571340 2142 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
COL8A1P27658 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
COL8A1P27658 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 SNORA21-201ENST00000362423 132 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RNU6-1287P-201ENST00000362914 107 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 Y_RNA.84-201ENST00000363011 104 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RNU6-611P-201ENST00000384276 104 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RNU6-306P-201ENST00000384617 107 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RNU6-1060P-201ENST00000384664 107 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RNU6-95P-201ENST00000384697 107 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RNU6-1154P-201ENST00000391001 104 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 ERMN-202ENST00000409216 746 ntTSL 4 BASIC5.5□□□□□ -1.53
COL8A1P27658 RNU2-33P-201ENST00000410344 192 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 Y_RNA.629-201ENST00000411368 105 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL8A1P27658 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.5□□□□□ -1.53
COL8A1P27658 AC096920.1-201ENST00000423991 241 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.5□□□□□ -1.53
COL8A1P27658 RPL7P46-201ENST00000425129 740 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AC092651.1-201ENST00000426110 312 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RPL23AP69-201ENST00000431134 458 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RPL21P112-201ENST00000434403 463 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AL035551.1-201ENST00000446931 348 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 CBX1P2-201ENST00000453841 458 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RPS15AP1-201ENST00000457423 391 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.5□□□□□ -1.53
COL8A1P27658 RN7SL643P-201ENST00000471845 291 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RN7SL809P-201ENST00000482040 297 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.5□□□□□ -1.53
COL8A1P27658 KHDC1P1-201ENST00000511053 508 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AC008716.1-201ENST00000511084 513 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 RNU6-1069P-201ENST00000516612 133 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC5.5□□□□□ -1.53
COL8A1P27658 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.5□□□□□ -1.53
COL8A1P27658 AP000648.1-201ENST00000529682 397 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms