Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSH3P20585 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSH3P20585 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSH3P20585 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH3P20585 AP000776.1-201ENST00000530032 1663 ntBASIC3.95□□□□□ -1.78
MSH3P20585 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.95□□□□□ -1.78
MSH3P20585 MIR372-201ENST00000362225 67 ntBASIC3.95□□□□□ -1.78
MSH3P20585 SNORD116-23-201ENST00000384645 92 ntBASIC3.95□□□□□ -1.78
MSH3P20585 TMSB4XP8-201ENST00000402089 135 ntBASIC3.95□□□□□ -1.78
MSH3P20585 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.95□□□□□ -1.78
MSH3P20585 RN7SKP56-201ENST00000410513 331 ntBASIC3.95□□□□□ -1.78
MSH3P20585 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSH3P20585 AL161449.1-201ENST00000414531 1199 ntBASIC3.95□□□□□ -1.78
MSH3P20585 TMSB4XP6-201ENST00000415187 135 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.95□□□□□ -1.78
MSH3P20585 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AC006960.1-201ENST00000419980 153 ntBASIC3.95□□□□□ -1.78
MSH3P20585 TMSB4XP1-201ENST00000424567 135 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 ATP5F1P1-201ENST00000433775 569 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AL356535.1-201ENST00000440335 398 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.95□□□□□ -1.78
MSH3P20585 AC104978.1-201ENST00000449387 391 ntBASIC3.95□□□□□ -1.78
MSH3P20585 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 RPS11P1-201ENST00000451072 473 ntBASIC3.95□□□□□ -1.78
MSH3P20585 NUTF2P7-201ENST00000453086 375 ntBASIC3.95□□□□□ -1.78
MSH3P20585 RPL21P134-201ENST00000453468 483 ntBASIC3.95□□□□□ -1.78
MSH3P20585 ART2BP-201ENST00000453501 499 ntBASIC3.95□□□□□ -1.78
MSH3P20585 RPS3AP22-201ENST00000488297 769 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AC069499.1-201ENST00000489433 509 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AC020593.1-201ENST00000507399 299 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AC109458.1-201ENST00000508858 316 ntBASIC3.95□□□□□ -1.78
MSH3P20585 RNU6-885P-201ENST00000516607 104 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.95□□□□□ -1.78
MSH3P20585 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSH3P20585 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.95□□□□□ -1.78
MSH3P20585 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.95□□□□□ -1.78
MSH3P20585 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AL360157.1-201ENST00000565962 87 ntBASIC3.95□□□□□ -1.78
MSH3P20585 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH3P20585 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.95□□□□□ -1.78
MSH3P20585 AC091488.1-201ENST00000604239 660 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AC018638.7-201ENST00000605836 1114 ntBASIC3.95□□□□□ -1.78
MSH3P20585 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH3P20585 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH3P20585 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSH3P20585 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
MSH3P20585 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH3P20585 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
MSH3P20585 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSH3P20585 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.95□□□□□ -1.78
MSH3P20585 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSH3P20585 AC109315.1-201ENST00000584143 1347 ntBASIC3.95□□□□□ -1.78
MSH3P20585 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
MSH3P20585 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
MSH3P20585 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSH3P20585 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.94□□□□□ -1.78
MSH3P20585 Z99496.1-201ENST00000469424 1477 ntBASIC3.94□□□□□ -1.78
MSH3P20585 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSH3P20585 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH3P20585 RNU6-582P-201ENST00000362989 107 ntBASIC3.94□□□□□ -1.78
MSH3P20585 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.94□□□□□ -1.78
MSH3P20585 SNORD116-2-201ENST00000384274 95 ntBASIC3.94□□□□□ -1.78
MSH3P20585 SNORD116-6-201ENST00000384711 96 ntBASIC3.94□□□□□ -1.78
MSH3P20585 RNU6-1300P-201ENST00000391046 108 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AC136624.1-201ENST00000400791 413 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AL356131.1-201ENST00000405826 414 ntBASIC3.94□□□□□ -1.78
MSH3P20585 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH3P20585 RAP1BP1-201ENST00000412709 553 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AC004022.2-201ENST00000413824 193 ntBASIC3.94□□□□□ -1.78
MSH3P20585 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 MTND2P18-201ENST00000419962 1030 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 TXNL1P1-201ENST00000429528 554 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.94□□□□□ -1.78
MSH3P20585 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH3P20585 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 AC092393.1-201ENST00000439625 742 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.94□□□□□ -1.78
MSH3P20585 MTCO2P25-201ENST00000447065 681 ntBASIC3.94□□□□□ -1.78
MSH3P20585 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
MSH3P20585 WBP1LP4-201ENST00000505043 344 ntBASIC3.94□□□□□ -1.78
MSH3P20585 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH3P20585 AC104090.1-201ENST00000506341 1171 ntBASIC3.94□□□□□ -1.78
MSH3P20585 OR5H4P-201ENST00000510851 923 ntBASIC3.94□□□□□ -1.78
MSH3P20585 MRPS33P3-201ENST00000513456 322 ntBASIC3.94□□□□□ -1.78
MSH3P20585 RNA5SP179-201ENST00000517284 121 ntBASIC3.94□□□□□ -1.78
MSH3P20585 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 AP001207.1-201ENST00000524051 481 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms