Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-328P-201ENST00000390887 106 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 MTND4P13-201ENST00000402078 1023 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 SNORA57.3-201ENST00000411095 141 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AC127526.1-201ENST00000417526 366 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD4P09016 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD4P09016 RPL23AP83-201ENST00000434984 473 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AC002542.1-201ENST00000440683 193 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 NOTCH2P1-201ENST00000443481 624 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 Z77249.1-201ENST00000444622 1175 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD4P09016 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD4P09016 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD4P09016 OR9M1P-201ENST00000459641 921 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AL049830.2-201ENST00000480072 201 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD4P09016 BOLA3P3-201ENST00000505182 232 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 OR5H4P-201ENST00000510851 923 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 snoZ278.1-201ENST00000517059 112 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 MRPS36P3-201ENST00000519284 130 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD4P09016 MTND4P33-201ENST00000556706 766 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD4P09016 MIR4458-201ENST00000578872 75 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.59□□□□□ -1.83
HOXD4P09016 AC015688.2-201ENST00000584523 262 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AL451044.1-201ENST00000604867 238 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AL392112.1-201ENST00000605115 829 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AL583856.2-201ENST00000606298 543 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AP003392.5-201ENST00000607857 415 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AC069200.1-201ENST00000609511 323 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AC092106.3-201ENST00000611308 722 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 VN1R74P-201ENST00000613259 503 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 AL713922.2-201ENST00000619384 716 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 Z99129.2-201ENST00000619967 314 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD4P09016 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD4P09016 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD4P09016 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.83
HOXD4P09016 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.83
HOXD4P09016 MTND4P8-201ENST00000514997 1362 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
HOXD4P09016 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.84
HOXD4P09016 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
HOXD4P09016 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.59□□□□□ -1.84
HOXD4P09016 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.59□□□□□ -1.84
HOXD4P09016 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.84
HOXD4P09016 NSRP1P1-201ENST00000444067 1693 ntBASIC3.59□□□□□ -1.84
HOXD4P09016 AC138393.1-206ENST00000540997 1886 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 RNA5SP119-201ENST00000362715 117 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HOXD4P09016 HNRNPDP2-201ENST00000406475 478 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 RAB9AP3-201ENST00000412737 573 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD4P09016 RPS24P7-201ENST00000416921 246 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AL356320.2-201ENST00000417263 507 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 PTP4A1P5-201ENST00000420305 455 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD4P09016 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD4P09016 HIGD1AP4-201ENST00000430194 280 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 MOB1AP1-201ENST00000430903 535 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 ATP5HP2-201ENST00000433885 485 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC084290.1-201ENST00000434995 374 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD4P09016 AC234064.1-201ENST00000436312 247 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 MTCO2P20-201ENST00000437339 673 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD4P09016 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD4P09016 RAB9AP1-201ENST00000449393 573 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD4P09016 PRSS3P4-201ENST00000453323 162 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD4P09016 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD4P09016 ACTR3P3-201ENST00000480448 893 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC006517.1-201ENST00000480485 328 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC069528.1-202ENST00000482888 637 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD4P09016 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD4P09016 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD4P09016 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD4P09016 RNA5SP164-201ENST00000516533 110 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD4P09016 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD4P09016 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD4P09016 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD4P09016 MTND3P13-201ENST00000574391 343 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 MIR5047-201ENST00000579212 100 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 NIFKP6-201ENST00000598115 845 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 EIF1P6-201ENST00000600054 334 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD4P09016 AL020997.3-201ENST00000602843 359 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
HOXD4P09016 AC103710.3-201ENST00000608157 948 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 AL121772.2-201ENST00000614331 297 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 AC231759.1-201ENST00000616455 597 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms