Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNU7-140P-201ENST00000459546 60 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 RPL21P18-201ENST00000469899 480 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 SAP18P1-201ENST00000512058 390 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 RNU6-467P-201ENST00000517027 110 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AL389895.1-201ENST00000554127 252 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AL121594.5-201ENST00000631724 573 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS35Q96QK1 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC000367.1-201ENST00000452711 1766 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS35Q96QK1 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS35Q96QK1 SGO1P1-201ENST00000603525 1447 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 RNA5SP51-201ENST00000364750 119 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 MIR16-1-201ENST00000385271 89 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 EI24P2-201ENST00000397776 1076 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 MTHFD2P2-201ENST00000407725 247 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 RAB9AP3-201ENST00000412737 573 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 TAF13P2-201ENST00000416876 286 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 RPP40P1-201ENST00000426762 456 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 RAB9AP1-201ENST00000449393 573 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 TVP23BP2-201ENST00000455082 615 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 RNF138P1-201ENST00000502765 546 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 RNU1-95P-201ENST00000516357 160 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 RNU1-128P-201ENST00000516704 160 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC023632.4-201ENST00000517783 191 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC008011.1-201ENST00000545989 227 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 AL845331.3-202ENST00000562856 261 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 CYP2C60P-201ENST00000566088 139 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 OR4G1P-201ENST00000588632 938 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 MTATP6P2-201ENST00000603319 678 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AL009028.1-201ENST00000604895 802 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC120053.1-201ENST00000607706 736 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC013468.1-201ENST00000608680 598 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AL592295.2-201ENST00000612578 206 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 AC105227.2-201ENST00000615075 605 ntBASIC3.63□□□□□ -1.83
VPS35Q96QK1 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS35Q96QK1 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS35Q96QK1 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS35Q96QK1 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
VPS35Q96QK1 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AL021368.2-201ENST00000606125 5352 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 ZNF285B-201ENST00000561698 1767 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 RNU6-353P-201ENST00000364266 108 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 RNU6-207P-201ENST00000384137 107 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 RNU6-1226P-201ENST00000384317 107 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 SNORD3H-201ENST00000384486 214 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 SSXP10-201ENST00000402595 565 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 UBE2V1P9-201ENST00000414760 368 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AL035423.1-201ENST00000420331 213 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC245054.1-201ENST00000420944 258 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 NDUFB1P1-201ENST00000435191 180 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC234064.1-201ENST00000436312 247 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS35Q96QK1 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC010655.1-201ENST00000449336 292 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 MTCO3P16-201ENST00000454456 754 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 MTCO3P20-201ENST00000454926 688 ntBASIC3.62□□□□□ -1.83
VPS35Q96QK1 AC005726.1-201ENST00000494679 427 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms