Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 BNIP3P19-201ENST00000605397 577 ntBASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 AC105429.2-201ENST00000610567 517 ntBASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 AL355365.1-201ENST00000616480 294 ntBASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC112Q8NEF3 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 RNU6-1251P-201ENST00000364502 107 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 AL035458.1-201ENST00000433096 585 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 PTGES3P5-201ENST00000455109 434 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 RPL7P5-201ENST00000471472 736 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 AP004217.1-201ENST00000480579 346 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 MIR3922-201ENST00000585192 84 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 AC121761.2-201ENST00000617300 689 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 AL133370.2-201ENST00000619934 439 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 AC073348.1-201ENST00000623002 331 ntBASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC112Q8NEF3 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 RNVU1-14-201ENST00000384770 164 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 YWHAZP7-201ENST00000436906 631 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 SETP5-201ENST00000437270 562 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 RPL21P10-201ENST00000463521 490 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 HMGB3P15-201ENST00000507326 574 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 AC113398.2-201ENST00000507630 558 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 AP004242.1-201ENST00000533701 349 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 NCAPGP2-201ENST00000557911 754 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 AL031985.2-201ENST00000600955 480 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 AC069234.5-201ENST00000611056 416 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 RPL23AP61-201ENST00000623642 466 ntBASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
CCDC112Q8NEF3 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
CCDC112Q8NEF3 GTF2H2B-203ENST00000508065 1432 ntBASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 HSPA8P19-201ENST00000505359 1517 ntBASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AC005019.1-201ENST00000436455 431 ntBASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 PANCR-201ENST00000503456 493 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AC092868.3-201ENST00000560515 784 ntBASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AC011468.4-201ENST00000603942 409 ntBASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AC113194.1-201ENST00000606037 500 ntBASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC112Q8NEF3 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 RNA5SP267-201ENST00000364893 126 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 MIR591-201ENST00000385290 95 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 MTND2P16-201ENST00000419987 799 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 AL356806.1-201ENST00000422524 916 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 MTCO1P43-201ENST00000431831 488 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 ELOCP11-201ENST00000436690 332 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 ELOCP16-201ENST00000444494 332 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 NPM1P49-201ENST00000448027 714 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 AC078918.1-201ENST00000498515 228 ntBASIC3.45□□□□□ -1.86
CCDC112Q8NEF3 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms