Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 RNA5SP274-201ENST00000410484 108 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.92□□□□□ -1.94
FOXA1P55317 AL512504.1-201ENST00000415494 778 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.92□□□□□ -1.94
FOXA1P55317 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC2.92□□□□□ -1.94
FOXA1P55317 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.92□□□□□ -1.94
FOXA1P55317 MTCO1P57-201ENST00000432182 261 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC2.92□□□□□ -1.94
FOXA1P55317 PRSS3P4-201ENST00000453323 162 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 SNRPGP3-201ENST00000469405 227 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 AC005912.1-201ENST00000495392 255 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC2.92□□□□□ -1.94
FOXA1P55317 AC016550.3-201ENST00000515706 767 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC2.92□□□□□ -1.94
FOXA1P55317 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.92□□□□□ -1.94
FOXA1P55317 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
FOXA1P55317 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.92□□□□□ -1.94
FOXA1P55317 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.92□□□□□ -1.94
FOXA1P55317 AC012468.1-201ENST00000604888 430 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC2.92□□□□□ -1.94
FOXA1P55317 AC019176.2-201ENST00000611579 315 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 MIR7112-201ENST00000616126 65 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 MIR7975-201ENST00000619350 68 ntBASIC2.92□□□□□ -1.94
FOXA1P55317 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC2.92□□□□□ -1.94
FOXA1P55317 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.92□□□□□ -1.94
FOXA1P55317 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
FOXA1P55317 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
FOXA1P55317 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
FOXA1P55317 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA1P55317 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA1P55317 AC024341.1-201ENST00000526444 1552 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC092326.2-201ENST00000624772 1561 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA1P55317 AC119744.1-201ENST00000454746 1715 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.91□□□□□ -1.94
FOXA1P55317 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA1P55317 SNORA54-201ENST00000384281 123 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 RPL7P25-201ENST00000404151 721 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.91□□□□□ -1.94
FOXA1P55317 AC092832.1-201ENST00000422934 400 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC012498.1-201ENST00000424037 437 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 AC244505.4-201ENST00000434905 287 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 MTCYBP12-201ENST00000440559 1134 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 SSXP5-201ENST00000443473 287 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 PRDX3P3-201ENST00000447765 522 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 RNU6-775P-201ENST00000459318 96 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.91□□□□□ -1.94
FOXA1P55317 AC010683.1-201ENST00000473673 378 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 RPS17P11-201ENST00000474297 293 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.91□□□□□ -1.94
FOXA1P55317 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC2.91□□□□□ -1.94
FOXA1P55317 HSPD1P15-201ENST00000505573 1122 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 HMGB1P47-201ENST00000511281 589 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC2.91□□□□□ -1.94
FOXA1P55317 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC2.91□□□□□ -1.94
FOXA1P55317 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA1P55317 ZNF192P1-203ENST00000565888 810 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 MIR5680-201ENST00000577577 84 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 RN7SL339P-201ENST00000580597 296 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC083760.1-201ENST00000589621 670 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC2.91□□□□□ -1.94
FOXA1P55317 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC2.91□□□□□ -1.94
FOXA1P55317 MIMT1-201ENST00000597105 1050 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AL031985.2-201ENST00000600955 480 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 AC135803.1-201ENST00000608748 565 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 uc_338.9-201ENST00000617424 182 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC026422.1-201ENST00000623961 452 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 AC139713.2-210ENST00000641741 992 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC2.91□□□□□ -1.94
FOXA1P55317 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
FOXA1P55317 AL353743.1-202ENST00000431724 1695 ntBASIC2.91□□□□□ -1.94
FOXA1P55317 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA1P55317 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA1P55317 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA1P55317 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
FOXA1P55317 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
FOXA1P55317 MIR181B1-201ENST00000385240 110 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 TAF9BP1-201ENST00000396646 746 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA1P55317 NPM1P24-201ENST00000428039 894 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 MRPS33P4-201ENST00000434892 317 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 SETP5-201ENST00000437270 562 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 RPS29P6-201ENST00000438196 145 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA1P55317 RPL37P4-201ENST00000448908 268 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA1P55317 AP000873.1-201ENST00000463987 400 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AP002884.2-201ENST00000471647 395 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms