Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
LIG3P49916 AC104623.2-202ENST00000623477 4002 ntBASIC5.71□□□□□ -1.5
LIG3P49916 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.7□□□□□ -1.5
LIG3P49916 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
LIG3P49916 RNA5SP258-201ENST00000362750 119 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RNU6-223P-201ENST00000362830 107 ntBASIC5.7□□□□□ -1.5
LIG3P49916 U3.20-201ENST00000390909 217 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RNA5SP241-201ENST00000391326 114 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RPL7P60-201ENST00000397636 735 ntBASIC5.7□□□□□ -1.5
LIG3P49916 Z97832.1-201ENST00000402490 328 ntBASIC5.7□□□□□ -1.5
LIG3P49916 FAT1P1-201ENST00000406588 507 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RNU6-1068P-201ENST00000410958 103 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.7□□□□□ -1.5
LIG3P49916 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.7□□□□□ -1.5
LIG3P49916 AC099336.2-201ENST00000422457 254 ntBASIC5.7□□□□□ -1.5
LIG3P49916 FABP7P1-201ENST00000424004 391 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RIMKLBP2-201ENST00000424737 654 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.7□□□□□ -1.5
LIG3P49916 RPL34P6-201ENST00000432390 345 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RPL23AP30-201ENST00000432419 501 ntBASIC5.7□□□□□ -1.5
LIG3P49916 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.7□□□□□ -1.5
LIG3P49916 CBWD4P-201ENST00000445695 655 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC079781.2-201ENST00000446424 169 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.7□□□□□ -1.5
LIG3P49916 AC099560.2-201ENST00000457554 255 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RNU7-63P-201ENST00000459054 62 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RPS23P2-201ENST00000463671 415 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC021660.1-201ENST00000465006 554 ntBASIC5.7□□□□□ -1.5
LIG3P49916 DUTP1-201ENST00000493631 470 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.7□□□□□ -1.5
LIG3P49916 AC093853.1-201ENST00000515689 483 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RNA5SP401-201ENST00000515920 127 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RNU6-410P-201ENST00000517006 107 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RNA5SP337-201ENST00000517007 109 ntBASIC5.7□□□□□ -1.5
LIG3P49916 RNU6-1220P-201ENST00000517126 108 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AP003497.1-201ENST00000528472 562 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.7□□□□□ -1.5
LIG3P49916 AC243972.3-201ENST00000539655 198 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.7□□□□□ -1.5
LIG3P49916 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.7□□□□□ -1.5
LIG3P49916 OR4T1P-201ENST00000554933 911 ntBASIC5.7□□□□□ -1.5
LIG3P49916 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.7□□□□□ -1.5
LIG3P49916 AC006272.2-201ENST00000594725 163 ntBASIC5.7□□□□□ -1.5
LIG3P49916 VN1R80P-201ENST00000597126 338 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC008782.1-201ENST00000603386 430 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AL139124.1-201ENST00000609123 421 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC116447.1-201ENST00000613153 453 ntBASIC5.7□□□□□ -1.5
LIG3P49916 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.7□□□□□ -1.5
LIG3P49916 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC126177.8-201ENST00000618339 1015 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AL596245.1-201ENST00000618994 362 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AL356585.4-201ENST00000623078 1229 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC090574.1-201ENST00000623186 233 ntBASIC5.7□□□□□ -1.5
LIG3P49916 CU639417.4-201ENST00000623928 207 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC079597.1-201ENST00000624306 508 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AL691477.1-201ENST00000624398 162 ntBASIC5.7□□□□□ -1.5
LIG3P49916 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
LIG3P49916 AC108467.2-201ENST00000617640 1597 ntBASIC5.7□□□□□ -1.5
LIG3P49916 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 AC133552.1-201ENST00000569988 4007 ntBASIC5.7□□□□□ -1.5
LIG3P49916 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
LIG3P49916 AC009229.4-201ENST00000623854 1947 ntBASIC5.7□□□□□ -1.5
LIG3P49916 AC011978.2-201ENST00000569835 2054 ntBASIC5.7□□□□□ -1.5
LIG3P49916 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIG3P49916 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG3P49916 AC006206.1-201ENST00000544842 3387 ntBASIC5.69□□□□□ -1.5
LIG3P49916 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
LIG3P49916 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG3P49916 AC004817.4-201ENST00000602396 3625 ntBASIC5.69□□□□□ -1.5
LIG3P49916 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
LIG3P49916 Y_RNA.166-201ENST00000363730 102 ntBASIC5.69□□□□□ -1.5
LIG3P49916 RNA5SP131-201ENST00000365452 119 ntBASIC5.69□□□□□ -1.5
LIG3P49916 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.69□□□□□ -1.5
LIG3P49916 MIR130A-201ENST00000385274 89 ntBASIC5.69□□□□□ -1.5
LIG3P49916 OR6E1P-201ENST00000414424 923 ntBASIC5.69□□□□□ -1.5
LIG3P49916 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.69□□□□□ -1.5
LIG3P49916 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC5.69□□□□□ -1.5
LIG3P49916 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC5.69□□□□□ -1.5
LIG3P49916 AC113412.1-201ENST00000425840 504 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.69□□□□□ -1.5
LIG3P49916 AL450996.1-201ENST00000445574 1202 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AC104651.2-201ENST00000447549 528 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AC239809.1-201ENST00000450470 217 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC5.69□□□□□ -1.5
LIG3P49916 RNA5SP103-201ENST00000459503 118 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AC018638.3-201ENST00000461273 132 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AP001992.1-205ENST00000462248 379 ntBASIC5.69□□□□□ -1.5
LIG3P49916 RPS27AP17-201ENST00000463344 455 ntBASIC5.69□□□□□ -1.5
LIG3P49916 PCBP2P3-201ENST00000509726 843 ntBASIC5.69□□□□□ -1.5
LIG3P49916 RNU6-1153P-201ENST00000516760 105 ntBASIC5.69□□□□□ -1.5
LIG3P49916 Y_RNA.701-201ENST00000516812 110 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms