Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MTND5P31-201ENST00000419366 1374 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 RNU6-236P-201ENST00000363886 106 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 DBIP2-201ENST00000419076 262 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 RPS6P12-201ENST00000432491 726 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 CKS1BP5-201ENST00000434172 273 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 MTND2P39-201ENST00000457230 764 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC106707.2-201ENST00000484182 374 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 HMGB1P38-201ENST00000490557 577 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC109471.1-201ENST00000511631 612 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 RNU4-60P-201ENST00000517239 135 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC104417.1-201ENST00000523974 751 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AGGF1P8-201ENST00000562979 1000 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC074051.3-201ENST00000570238 358 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 MIR4429-201ENST00000580105 73 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AL009028.1-201ENST00000604895 802 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 HSPE1P14-201ENST00000605812 302 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC121761.2-201ENST00000617300 689 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 RMST_9.1-201ENST00000619945 193 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC009093.8-201ENST00000641769 292 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AL627171.1-201ENST00000618845 1308 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 AC111188.2-201ENST00000529697 1387 ntBASIC3.65□□□□□ -1.82
LHX3Q9UBR4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
LHX3Q9UBR4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
LHX3Q9UBR4 MTCO1P24-201ENST00000515438 1558 ntBASIC3.65□□□□□ -1.82
LHX3Q9UBR4 RNA5SP322-201ENST00000363617 119 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 RNU1-85P-201ENST00000364127 164 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 RNU6-441P-201ENST00000384545 106 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 SNORA48.7-201ENST00000391302 135 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 SSXP10-201ENST00000402595 565 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 MTCO3P31-201ENST00000405526 789 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 RNU6-575P-201ENST00000411326 105 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC096533.1-201ENST00000411645 353 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC009237.2-201ENST00000421358 284 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC096632.1-201ENST00000427395 310 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC092634.2-201ENST00000428146 1010 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 FTH1P6-201ENST00000430768 320 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC011242.1-201ENST00000433596 1158 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AL590399.6-201ENST00000446396 307 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC073387.1-201ENST00000453261 709 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC244505.3-201ENST00000454598 187 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 NF1P3-201ENST00000457709 450 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC091564.1-201ENST00000464563 479 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 RPL21P129-201ENST00000491732 478 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 RNF138P1-201ENST00000502765 546 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC048346.1-201ENST00000510247 144 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC005798.1-201ENST00000513715 387 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 snoZ278.1-201ENST00000517059 112 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 OR6C73P-201ENST00000546432 358 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC006077.1-201ENST00000604746 343 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 SNORA51-201ENST00000606420 132 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC010872.1-201ENST00000624225 675 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 AC007656.2-201ENST00000624902 4547 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 OR11H5P-202ENST00000641612 1325 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 MTND5P3-201ENST00000438536 1800 ntBASIC3.65□□□□□ -1.83
LHX3Q9UBR4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
LHX3Q9UBR4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AL355143.1-201ENST00000407101 841 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 MTND4P22-201ENST00000413116 1169 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 RPL31P2-201ENST00000413849 377 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC092832.1-201ENST00000422934 400 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms